[Mesa-users] Non-adiabatic GYRE and input format?

Giovanni Mirouh gmirouh at iaa.csic.es
Mon Nov 18 20:00:42 UTC 2024


Dear all,

I have been trying to compute oscillations with GYRE for a MESA model 
that I saved in the OSC format, to no avail. The short question is: can 
GYRE do non-adiabatic calculations from an OSC input file?

More details for the real aficionados: while the adiabatic calculation 
seems to go smoothly, the non-adiabatic calculation fails right as soon 
as it actually tries to compute complex eigenvalues. From the error 
message, it appears some variables are missing from the OSC files. I 
have attached my GYRE inlist, the output I get (both stdout and error), 
and my 5MB OSC model file can be found here 
https://drop.infini.fr/r/j7Ey8qmRM7#uX/Rewom6a73q4D4EHmVbq063lJ53waucJ6gasUs4aI=. 

I am using GYRE 7.2.1, the model was generated with MESA 23.05.1 on a 
machine running Ubuntu 22.04.1 LTS.

I also noted that all the non-adiabatic test cases use the MESA input 
(the one that's called GYRE in MESA), is that the only one that works 
for the nonad case? I quickly checked the documentation of both formats, 
they seem to contain almost the exact same info except that OSC has 
(eps_nuc + eps_grav) while GYRE/MESA has the two quantities as two 
separate variables, am I missing some subtlety here?

Thank you in advance for your help,
Best.
-- 
Giovanni.
-------------- next part --------------
gyre [7.2.1]
------------

OpenMP Threads   : 20
Input filename   : gyre_ad.in

Model Init
----------

Reading from OSC file
   File name /home/gio/Work/patrick/test_track/profile180.data.OSC
   File version 2000
   Read 4936 points
   No need to add central point

Mode Search
-----------

Mode parameters
   l : 0
   m : 0

Building frequency grid (REAL axis)
   added scan interval :  0.3000E+01 ->  0.1000E+02 (50 points, LINEAR)

Building spatial grid
   Scaffold grid from model
   Refined 0 subinterval(s) in iteration 1
   Final grid has 1 segment(s) and 4936 point(s):
      Segment 1 : x range 0.0000 -> 1.0000 (1 -> 4936)

Starting search (adiabatic)

Evaluating discriminant
  Time elapsed :     0.741 s

Root Solving
   l    m    n_pg    n_p    n_g       Re(omega)       Im(omega)        chi n_iter
   0    0       1      1      0  0.36981957E+01  0.00000000E+00 0.7788E-14      7
   0    0       2      2      0  0.46454449E+01  0.00000000E+00 0.2989E-14      7
   0    0       3      3      0  0.57064555E+01  0.00000000E+00 0.6508E-15      6
   0    0       4      4      0  0.68023094E+01  0.00000000E+00 0.8751E-14      7
   0    0       5      5      0  0.78820586E+01  0.00000000E+00 0.8386E-14      8
   0    0       6      6      0  0.89145219E+01  0.00000000E+00 0.4528E-13      6
   0    0       7      7      0  0.99621378E+01  0.00000000E+00 0.6488E-14      6
  Time elapsed :      0.043 s

Model lacks the following structure coefficients:
Model lacks the following structure coefficients:
Model lacks the following structure coefficients:
   
           1           2           3           4           5           8           7           6          10          11          13          14          15          16          19          20
 ABORT at line 148 of /home/gio/Software/gyre-7.2.1/src/model/model_util_m.fypp
 model check failed
ERROR STOP 

Error termination. Backtrace:
Model lacks the following structure coefficients:
   
           1           2           3           4           5           8           7           6          10          11          13          14          15          16          19          20
 ABORT at line 148 of /home/gio/Software/gyre-7.2.1/src/model/model_util_m.fypp
 model check failed
ERROR STOP 

Error termination. Backtrace:
Model lacks the following structure coefficients:
   
           1           2           3           4           5           8           7           6          10          11          13          14          15          16          19          20
 ABORT at line 148 of /home/gio/Software/gyre-7.2.1/src/model/model_util_m.fypp
 model check failed
ERROR STOP 

Error termination. Backtrace:
Model lacks the following structure coefficients:
   
           1           2           3           4           5           8           7           6          10          11          13          14          15          16          19          20
 ABORT at line 148 of /home/gio/Software/gyre-7.2.1/src/model/model_util_m.fypp
 model check failed
ERROR STOP 

Error termination. Backtrace:
Model lacks the following structure coefficients:
   
           1           2           3           4           5           8           7           6          10          11          13          14          15          16          19          20
 ABORT at line 148 of /home/gio/Software/gyre-7.2.1/src/model/model_util_m.fypp
 model check failed
ERROR STOP 

Error termination. Backtrace:
Model lacks the following structure coefficients:
   
           1           2           3           4           5           8           7           6          10          11          13          14          15          16          19          20
 ABORT at line 148 of /home/gio/Software/gyre-7.2.1/src/model/model_util_m.fypp
 model check failed
ERROR STOP 

Error termination. Backtrace:
Model lacks the following structure coefficients:
   
           1           2           3           4           5           8           7           6          10          11          13          14          15          16          19          20
 ABORT at line 148 of /home/gio/Software/gyre-7.2.1/src/model/model_util_m.fypp
 model check failed
ERROR STOP 

Error termination. Backtrace:
Model lacks the following structure coefficients:
   
           1           2           3           4           5           8           7           6          10          11          13          14          15          16          19          20
 ABORT at line 148 of /home/gio/Software/gyre-7.2.1/src/model/model_util_m.fypp
 model check failed
ERROR STOP 

Error termination. Backtrace:
Model lacks the following structure coefficients:
   
           1           2           3           4           5           8           7           6          10          11          13          14          15          16          19          20
 ABORT at line 148 of /home/gio/Software/gyre-7.2.1/src/model/model_util_m.fypp
 model check failed
ERROR STOP 

Error termination. Backtrace:
Model lacks the following structure coefficients:
   
           1           2           3           4           5           8           7           6          10          11          13          14          15          16          19          20
 ABORT at line 148 of /home/gio/Software/gyre-7.2.1/src/model/model_util_m.fypp
 model check failed
ERROR STOP 

Error termination. Backtrace:
   
           1           2           3           4           5           8           7           6          10          11          13          14          15          16          19          20
 ABORT at line 148 of /home/gio/Software/gyre-7.2.1/src/model/model_util_m.fypp
 model check failed
ERROR STOP 

Error termination. Backtrace:
Model lacks the following structure coefficients:
   
           1           2           3           4           5           8           7           6          10          11          13          14          15          16          19          20
 ABORT at line 148 of /home/gio/Software/gyre-7.2.1/src/model/model_util_m.fypp
 model check failed
ERROR STOP 

Error termination. Backtrace:
Model lacks the following structure coefficients:
   
           1           2           3           4           5           8           7           6          10          11          13          14          15          16          19          20
 ABORT at line 148 of /home/gio/Software/gyre-7.2.1/src/model/model_util_m.fypp
 model check failed
ERROR STOP 

Error termination. Backtrace:
Model lacks the following structure coefficients:
   
           1           2           3           4           5           8           7           6          10          11          13          14          15          16          19          20
 ABORT at line 148 of /home/gio/Software/gyre-7.2.1/src/model/model_util_m.fypp
 model check failed
ERROR STOP 

Error termination. Backtrace:
Model lacks the following structure coefficients:
   
           1           2           3           4           5           8           7           6          10          11          13          14          15          16          19          20
 ABORT at line 148 of /home/gio/Software/gyre-7.2.1/src/model/model_util_m.fypp
 model check failed
ERROR STOP 

Error termination. Backtrace:
   
           1           2           3           4           5           8           7           6          10          11          13          14          15          16          19          20
 ABORT at line 148 of /home/gio/Software/gyre-7.2.1/src/model/model_util_m.fypp
 model check failed
ERROR STOP 

Error termination. Backtrace:
Model lacks the following structure coefficients:
   
           1           2           3           4           5           8           7           6          10          11          13          14          15          16          19          20
 ABORT at line 148 of /home/gio/Software/gyre-7.2.1/src/model/model_util_m.fypp
 model check failed
ERROR STOP 

Error termination. Backtrace:
Model lacks the following structure coefficients:
   
           1           2           3           4           5           8           7           6          10          11          13          14          15          16          19          20
 ABORT at line 148 of /home/gio/Software/gyre-7.2.1/src/model/model_util_m.fypp
 model check failed
ERROR STOP 

Error termination. Backtrace:
Model lacks the following structure coefficients:
   
           1           2           3           4           5           8           7           6          10          11          13          14          15          16          19          20
 ABORT at line 148 of /home/gio/Software/gyre-7.2.1/src/model/model_util_m.fypp
 model check failed
ERROR STOP 

Error termination. Backtrace:
Model lacks the following structure coefficients:
   
           1           2           3           4           5           8           7           6          10          11          13          14          15          16          19          20
 ABORT at line 148 of /home/gio/Software/gyre-7.2.1/src/model/model_util_m.fypp
 model check failed
ERROR STOP 

Error termination. Backtrace:
#0  0x724b0b4237f2 in ???
#0  0x724b0b4237f2 in ???
#1  0x724b0b424369 in ???
#2  0x724b0b4256a7 in ???
#3  0x724b0cb5a89f in ???
#4  0x724b0cb66817 in ???
#5  0x724b0cb423e2 in ???
#6  0x724b0cb0a8af in ???
#7  0x724b0cb636ec in ???
#8  0x724b0cb60bba in ???
#9  0x724b0c0a83ad in ???
#10  0x724b0b094ac2 in ???
#0  0x724b0b4237f2 in ???
#1  0x724b0b424369 in ???
#2  0x724b0b4256a7 in ???
#3  0x724b0cb5a89f in ???
#4  0x724b0cb66817 in ???
#5  0x724b0cb423e2 in ???
#6  0x724b0cb0a8af in ???
#7  0x724b0cb636ec in ???
#8  0x724b0cb60bba in ???
#9  0x724b0c0a83ad in ???
#10  0x724b0b094ac2 in ???
#11  0x724b0b12684f in ???
#12  0xffffffffffffffff in ???

-------------- next part --------------
&constants
/

&model
  model_type = 'EVOL'  ! Obtain stellar structure from an evolutionary model
  file = 'test.data.OSC'    ! File name of the evolutionary model
  file_format = 'OSC' ! File format of the evolutionary model
/

&mode
  l = 0 ! Harmonic degree
/

&mode
  l = 1 ! Harmonic degree
  m = -1
/

&mode
  l = 1 ! Harmonic degree
  m = 0
/

&mode
  l = 1 ! Harmonic degree
  m = 1
/

&mode
  l = 2 ! Harmonic degree
  m = -2
/

&mode
  l = 2 ! Harmonic degree
  m = -1
/

&mode
  l = 2 ! Harmonic degree
  m = 0
/

&mode
  l = 2 ! Harmonic degree
  m = 1
/

&mode
  l = 2 ! Harmonic degree
  m = 2
/

&osc
  nonadiabatic = .TRUE.
  outer_bound = 'VACUUM' ! Assume the density vanishes at the stellar surface
/

&rot
coriolis_method = 'NULL'
/

&num
  diff_scheme = 'COLLOC_GL4' ! 4th-order collocation scheme for difference equations
/

&scan
  grid_type = 'LINEAR' ! Scan grid uniform in frequency
  freq_min = 57        ! Minimum frequency to scan from
  freq_max = 579        ! Maximum frequency to scan to
  n_freq = 200          ! Number of frequency points in scan
  freq_units = 'UHZ'
/

&grid
  w_osc = 10 ! Oscillatory region weight parameter
  w_exp = 2  ! Exponential region weight parameter
  w_ctr = 10 ! Central region weight parameter
/

&ad_output
/

&nad_output
  summary_file_format = 'TXT'
  summary_file = 'summary.txt'                         ! File name for summary file
  summary_item_list = 'l,m, n_pg,n_p, n_g,freq,freq_units,E_norm' ! Items to appear in summary file
  freq_units = 'UHZ'                   	      ! Units of freq output items
/



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