[Mesa-users] error while using running several modules on cluster

[aman awasthi]

The MESA installation was successful. Thank you Rob and Warrick.



Aman

On Wed, May 31, 2023 at 1:19 PM Rob Farmer <robert.j.farmer37 at gmail.com>
wrote:

> When running older mesa's it is advisable to use the sdk from that release.
>
> http://user.astro.wisc.edu/~townsend/static.php?ref=mesasdk#Download
>
> Rob
>
> On Wed, 31 May 2023 at 09:47, Warrick Ball via Mesa-users <
> mesa-users at lists.mesastar.org> wrote:
>
>> Hi Aman,
>>
>> I just searched the mailing list archives [1] for `show_stuff`, which
>> turned up this thread:
>>
>>
>> https://lists.mesastar.org/pipermail/mesa-users/2022-August/013938.html
>>
>> The first suggestion there is to double-check that you ran `./clean`
>> before `./install` (perhaps just try again).  If that doesn't work, try
>> using MESA SDK version 21.4.1 instead.
>>
>> Cheers,
>> Warrick
>>
>> [1] https://lists.mesastar.org/pipermail/mesa-users/
>>
>> ___________
>>
>> Warrick Ball
>> Senior Research Software Engineer
>> University of Birmingham
>> W.H.Ball at bham.ac.uk
>>
>> On Wed, 31 May 2023, aman awasthi via Mesa-users wrote:
>>
>> > CAUTION: This email originated from outside the organisation. Do not
>> click links or open attachments unless you recognise the sender and know
>> the content is safe.
>> > HI Rob,
>> >  Just before getting your suggestion, I just tried to install the
>> mesa-r15140 again. So I Went into the $MESA_DIR directory and performed
>> ./clean and ./install. While  installation, I am getting a similar error
>> repeatedly
>> >   I am using mesa-r 15140 and mesasdk
>> mesasdk-x86_64-linux-22.6.1.tar.gz.   I am trying to install the
>> mesa_r15140 on my cluster.
>> >
>> >
>> > Please suggest what I should do.
>> >
>> > Sincerely
>> > Aman
>> >
>> > The error is as follows
>> > ************************************************
>> >
>> > /home/BHMG2/mesa-r15140/rates
>> > building rates package.
>> >
>> > MAKEDEPF90
>> > COMPILE_CMD ../public/rates_def.f90
>> > COMPILE_CMD ../private/weak_support.f90
>> > COMPILE_CMD ../private/eval_psi.f90
>> > COMPILE_BASIC ../private/rates_names.f90
>> > COMPILE_CMD ../private/weaklib_tables.f90
>> > COMPILE_CMD ../private/rates_reverses.f90
>> > COMPILE_CMD ../private/suzuki_tables.f90
>> > COMPILE_CMD ../private/coulomb.f90
>> > COMPILE_CMD ../private/load_ecapture.f90
>> > COMPILE_CMD ../private/eval_coulomb.f90
>> > COMPILE_CMD ../private/reaclib_eval.f90
>> > COMPILE_CMD ../private/reaclib_support.f90
>> > COMPILE_CMD ../private/pycno.f90
>> > COMPILE_CMD ../private/screen5.f90
>> > COMPILE_CMD ../private/screen_graboske.f90
>> > COMPILE_CMD ../private/screen.f90
>> > COMPILE_CMD ../private/screen_chugunov.f90
>> > COMPILE_CMD ../private/eval_ecapture.f90
>> > COMPILE_CMD ../private/reaclib_print.f90
>> > COMPILE_CMD ../private/ratelib.f90
>> > COMPILE_CMD ../private/reaclib_input.f90
>> > COMPILE_CMD ../private/load_weak.f90
>> > COMPILE_CMD ../private/eval_weak.f90
>> > ../private/eval_weak.f90:337:23:
>> >
>> >   210 |                call show_stuff
>> >       |                              2
>> > ......
>> >   337 |             do i = 1, n
>> >       |                       1
>> > Error: Index variable 'i' redefined at (1) in procedure 'show_stuff'
>> called from within DO loop at (2)
>> > ../private/eval_weak.f90:337:23:
>> >
>> >   316 |                call show_stuff
>> >       |                              2
>> > ......
>> >   337 |             do i = 1, n
>> >       |                       1
>> > Error: Index variable 'i' redefined at (1) in procedure 'show_stuff'
>> called from within DO loop at (2)
>> > make: *** [eval_weak.o] Error 1
>> > make: *** Waiting for unfinished jobs....
>> >
>> > /home/BHMG2/mesa-r15140/rates/make
>> > FAILED
>> >
>> >
>> > /home/BHMG2/mesa-r15140/rates
>> > ./build_and_test FAILED
>> >
>> > On Tue, May 30, 2023 at 2:52 PM Rob Farmer <robert.j.farmer37 at gmail.com>
>> wrote:
>> >       I suggest checking that you have initialized the SDK correctly in
>> your submission script (
>> https://docs.mesastar.org/en/release-r22.11.1/installation.html#check-that-your-environment-variables-are-set-correctly
>> ).
>> >
>> > If you add:
>> >
>> > which gfortran
>> >
>> > to your submission script, what is the output?
>> >
>> > Rob
>> >
>> > On Tue, 30 May 2023 at 10:50, aman awasthi via Mesa-users <
>> mesa-users at lists.mesastar.org> wrote:
>> >       Hi all,
>> >
>> > I ran a ppisn module in the cluster as a single job submission. It was
>> submitted fine, It is in the queue and hopefully will finish soon.
>> >
>> > But when I am trying to run the several ppisn modules with different
>> masses as many jobs submission.   I am getting an error file for each
>> module. The error is as follows
>> >
>> > /home/BHMG2/aman_ppisn_rotation/many_jobs/base/star: error while
>> loading shared libraries: libhdf5_fortran.so.200: cannot open shared object
>> file: No such file or directory
>> >
>> > what to do?
>> >
>> > Also I am using mesa-r15140 and mesasdk-x86_64-linux-22.6.1.tar.gz.
>> >
>> > Sincerely
>> > Aman
>> > _______________________________________________
>> > mesa-users at lists.mesastar.org
>> > https://lists.mesastar.org/mailman/listinfo/mesa-users
>> >
>> >
>> >
>> _______________________________________________
>> mesa-users at lists.mesastar.org
>> https://lists.mesastar.org/mailman/listinfo/mesa-users
>>
>>
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