[Mesa-users] error while using running several modules on cluster

[Warrick Ball]

Hi Aman,

I just searched the mailing list archives [1] for `show_stuff`, which turned up this thread:

     https://lists.mesastar.org/pipermail/mesa-users/2022-August/013938.html

The first suggestion there is to double-check that you ran `./clean` before `./install` (perhaps just try again).  If that doesn't work, try using MESA SDK version 21.4.1 instead.

Cheers,
Warrick

[1] https://lists.mesastar.org/pipermail/mesa-users/

___________

Warrick Ball
Senior Research Software Engineer
University of Birmingham
W.H.Ball at bham.ac.uk

On Wed, 31 May 2023, aman awasthi via Mesa-users wrote:

> CAUTION: This email originated from outside the organisation. Do not click links or open attachments unless you recognise the sender and know the content is safe.
> HI Rob,
>  Just before getting your suggestion, I just tried to install the mesa-r15140 again. So I Went into the $MESA_DIR directory and performed ./clean and ./install. While  installation, I am getting a similar error repeatedly
>   I am using mesa-r 15140 and mesasdk mesasdk-x86_64-linux-22.6.1.tar.gz.   I am trying to install the mesa_r15140 on my cluster.
> 
> 
> Please suggest what I should do.
> 
> Sincerely
> Aman
> 
> The error is as follows
> ************************************************
> 
> /home/BHMG2/mesa-r15140/rates
> building rates package.
> 
> MAKEDEPF90
> COMPILE_CMD ../public/rates_def.f90
> COMPILE_CMD ../private/weak_support.f90
> COMPILE_CMD ../private/eval_psi.f90
> COMPILE_BASIC ../private/rates_names.f90
> COMPILE_CMD ../private/weaklib_tables.f90
> COMPILE_CMD ../private/rates_reverses.f90
> COMPILE_CMD ../private/suzuki_tables.f90
> COMPILE_CMD ../private/coulomb.f90
> COMPILE_CMD ../private/load_ecapture.f90
> COMPILE_CMD ../private/eval_coulomb.f90
> COMPILE_CMD ../private/reaclib_eval.f90
> COMPILE_CMD ../private/reaclib_support.f90
> COMPILE_CMD ../private/pycno.f90
> COMPILE_CMD ../private/screen5.f90
> COMPILE_CMD ../private/screen_graboske.f90
> COMPILE_CMD ../private/screen.f90
> COMPILE_CMD ../private/screen_chugunov.f90
> COMPILE_CMD ../private/eval_ecapture.f90
> COMPILE_CMD ../private/reaclib_print.f90
> COMPILE_CMD ../private/ratelib.f90
> COMPILE_CMD ../private/reaclib_input.f90
> COMPILE_CMD ../private/load_weak.f90
> COMPILE_CMD ../private/eval_weak.f90
> ../private/eval_weak.f90:337:23:
> 
>   210 |                call show_stuff
>       |                              2
> ......
>   337 |             do i = 1, n
>       |                       1
> Error: Index variable 'i' redefined at (1) in procedure 'show_stuff' called from within DO loop at (2)
> ../private/eval_weak.f90:337:23:
> 
>   316 |                call show_stuff
>       |                              2
> ......
>   337 |             do i = 1, n
>       |                       1
> Error: Index variable 'i' redefined at (1) in procedure 'show_stuff' called from within DO loop at (2)
> make: *** [eval_weak.o] Error 1
> make: *** Waiting for unfinished jobs....
> 
> /home/BHMG2/mesa-r15140/rates/make
> FAILED
> 
> 
> /home/BHMG2/mesa-r15140/rates
> ./build_and_test FAILED
> 
> On Tue, May 30, 2023 at 2:52 PM Rob Farmer <robert.j.farmer37 at gmail.com> wrote:
>       I suggest checking that you have initialized the SDK correctly in your submission script ( https://docs.mesastar.org/en/release-r22.11.1/installation.html#check-that-your-environment-variables-are-set-correctly ).
> 
> If you add:
> 
> which gfortran
> 
> to your submission script, what is the output?
> 
> Rob
> 
> On Tue, 30 May 2023 at 10:50, aman awasthi via Mesa-users <mesa-users at lists.mesastar.org> wrote:
>       Hi all,
> 
> I ran a ppisn module in the cluster as a single job submission. It was submitted fine, It is in the queue and hopefully will finish soon.
> 
> But when I am trying to run the several ppisn modules with different masses as many jobs submission.   I am getting an error file for each module. The error is as follows
> 
> /home/BHMG2/aman_ppisn_rotation/many_jobs/base/star: error while loading shared libraries: libhdf5_fortran.so.200: cannot open shared object file: No such file or directory
> 
> what to do?
> 
> Also I am using mesa-r15140 and mesasdk-x86_64-linux-22.6.1.tar.gz. 
> 
> Sincerely
> Aman
> _______________________________________________
> mesa-users at lists.mesastar.org
> https://lists.mesastar.org/mailman/listinfo/mesa-users
> 
> 
>