[Mesa-users] Trouble Installing r-10398 on a Macbook Pro

Sandoval, Chloe ckeeling at vols.utk.edu
Tue Mar 19 17:19:12 EDT 2019 

Amber,

Yep that's how I intended it to be setup.  I have multiple large codes on
my computer and I was using multiple versions of MESA so I have the Mesa/
folder to hold all my different versions.

Rich,

I got Xcode and the command line tools reinstalled and made it past crlibm
and got a new error message.
gfortran -Wno-uninitialized -fno-range-check -fmax-errors=12
-fprotect-parens -fno-sign-zero -fbacktrace -ggdb -finit-real=snan
-fopenmp  -std=f2008 -Wno-error=tabs -I../public -I../private
-I../../include -I/Applications/mesasdk/include -Wunused-value -Werror -W
-Wno-compare-reals -Wno-unused-parameter -fimplicit-none   -O2 -c
-ffree-form -x f95-cpp-input -I../defaults -I../job -I../other
../private/star_private_def.f90
../private/star_private_def.f90:203:47:

../private/star_private_def.f90:199:37:

          do i=1,num_termination_codes
                                     2
../private/star_private_def.f90:203:47:

                      trim(termination_code_str(i-1)), i
                                               1
Error: Array reference at (1) out of bounds (0 < 1) in loop beginning at
(2) [-Werror=do-subscript]
../private/star_private_def.f90:296:80:

../private/star_private_def.f90:293:23:

          do i=1,numTlim
                       2

../private/star_private_def.f90:296:80:

                   write(*,2) 'missing dt_why_str following ' //
trim(dt_why_str(i-1)), i

    1
Error: Array reference at (1) out of bounds (0 < 1) in loop beginning at
(2) [-Werror=do-subscript]
f951: all warnings being treated as errors
make: *** [star_private_def.o] Error 1

/Users/chloekeeling/Research/Code/Mesa/mesa/star/make
FAILED


/Users/chloekeeling/Research/Code/Mesa/mesa/star
./build_and_test FAILED


I've attached another tmp.txt for this failure and the new build.log file.




On Tue, Mar 19, 2019 at 4:22 PM amber lauer <amberlauer at gmail.com> wrote:

> Hey Chloe, just noticed you seemed to have doubled up on the "mesa"
> subfolder in your path variable. Is that intentional?
>
> For example the line :
>
> echo $MESA_DIR:
> /Users/chloekeeling/Research/Code/Mesa/mesa
>
> looks like this on my system:
>
> echo $MESA_DIR:
> /home/amber/executables/mesa10398
>
> and then, for example, the folder crlibm would be directly under that
>
> /home/amber/executables/mesa10398/crlibm
>
> whereas yours is
>
> /Users/chloekeeling/Research/Code/Mesa/mesa/crlibm
>
> Just want to check and make sure that's what you want.
>
>
> On Tue, Mar 19, 2019 at 3:50 PM RICHARD H D TOWNSEND via Mesa-users <
> mesa-users at lists.mesastar.org> wrote:
>
>> OK. Is there anything in the /Library/Developer/CommandLineTools/Packages
>> directory?
>>
>> > On Mar 19, 2019, at 2:47 PM, Sandoval, Chloe <ckeeling at vols.utk.edu>
>> wrote:
>> >
>> > No I'm not able to do so. I get the following error message.
>> >
>> > The file
>> /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg
>> does not exist.
>> > -Chloe
>> >
>> > On Tue, Mar 19, 2019 at 3:41 PM RICHARD H D TOWNSEND <
>> townsend at astro.wisc.edu> wrote:
>> > Hi Chloe (cc'ing the MESA users list, to keep them in the loop) --
>> >
>> > Are you able to install the system headers via the command
>> >
>> > open
>> /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg
>> >
>> > (This usually only needs to be done on OSX 10.14 systems, but for some
>> reason your system also seems to need it).
>> >
>> > cheers,
>> >
>> > Rich
>> >
>> > > On Mar 19, 2019, at 2:21 PM, Sandoval, Chloe <ckeeling at vols.utk.edu>
>> wrote:
>> > >
>> > > Hi Rich,
>> > >
>> > > Here's the outputs
>> > > ls /usr:
>> > > X11           lib             local           share
>> > > bin           libexec         sbin            standalone
>> > >
>> > >
>> > > system_profiler SPSoftwareDataType:
>> > > Software:
>> > >
>> > >     System Software Overview:
>> > >
>> > >       System Version: macOS 10.13.6 (17G5019)
>> > >       Kernel Version: Darwin 17.7.0
>> > >       Boot Volume: Macintosh HD
>> > >       Boot Mode: Normal
>> > >       Computer Name: Chloe’s MacBook Pro
>> > >       User Name: Chloe Keeling (chloekeeling)
>> > >       Secure Virtual Memory: Enabled
>> > >       System Integrity Protection: Enabled
>> > >       Time since boot: 31 days 18:32
>> > >
>> > >
>> > >
>> > > ls
>> /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs:
>> > >
>> > > MacOSX.sdk    MacOSX10.14.sdk
>> > >
>> > > -Chloe
>> > >
>> > > On Tue, Mar 19, 2019 at 3:05 PM RICHARD H D TOWNSEND <
>> townsend at astro.wisc.edu> wrote:
>> > > Hi Chloe --
>> > >
>> > > It seems the system header files for the compiler are not being
>> found. Can you send the output from the following three commands:
>> > >
>> > > ls /usr
>> > >
>> > > system_profiler SPSoftwareDataType
>> > >
>> > > ls
>> /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs
>> > >
>> > > cheers,
>> > >
>> > > Rich
>> > >
>> > > > On Mar 19, 2019, at 2:00 PM, Sandoval, Chloe via Mesa-users <
>> mesa-users at lists.mesastar.org> wrote:
>> > > >
>> > > > Hi all,
>> > > >
>> > > > I'm having trouble installing r-10398 on my laptop after previously
>> installing 3 different versions of MESA successfully on this machine. I'm
>> using the most recent version of the SDK and I've tried it with the release
>> before that as well and still failed. I've tried using svn co to download
>> everything after deleting it all.
>> > > >
>> > > > I get the following error when the install gets to crlibm
>> > > >
>> > > > ./configure CC=gcc CFLAGS=
>> > > > checking for a BSD-compatible install... /usr/bin/install -c
>> > > > checking whether build environment is sane... yes
>> > > > checking for a thread-safe mkdir -p... ./install-sh -c -d
>> > > > checking for gawk... no
>> > > > checking for mawk... no
>> > > > checking for nawk... no
>> > > > checking for awk... awk
>> > > > checking whether make sets $(MAKE)... yes
>> > > > checking build system type... i386-apple-darwin17.7.0
>> > > > checking host system type... i386-apple-darwin17.7.0
>> > > > checking whether make sets $(MAKE)... (cached) yes
>> > > > checking for C compiler default output file name...
>> > > > configure: error: in
>> `/Users/chloekeeling/Research/Code/Mesa/mesa/crlibm/crlibm':
>> > > > configure: error: C compiler cannot create executables
>> > > > See `config.log' for more details.
>> > > > make: *** [build] Error 77
>> > > > make: *** No targets specified and no makefile found.  Stop.
>> > > >
>> > > > /Users/chloekeeling/Research/Code/Mesa/mesa/crlibm/crlibm
>> > > > ./build_and_test FAILED
>> > > >
>> > > >
>> > > > /Users/chloekeeling/Research/Code/Mesa/mesa/crlibm
>> > > > ./build_and_test FAILED
>> > > >
>> > > > I've also attached the build.log and the config.log from
>> $MESA_DIR/crlibm/crlibm and the tmp.txt file as well.
>> > > >
>> > > > Specs:
>> > > > Macbook Pro
>> > > > OS: High Sierra v 10.13.6
>> > > >
>> > > > uname -a : Darwin Chloes-MacBook-Pro.local 17.7.0 Darwin Kernel
>> Version 17.7.0: Thu Dec 20 21:47:19 PST 2018;
>> root:xnu-4570.71.22~1/RELEASE_X86_64 x86_64
>> > > >
>> > > > gfortran -v: Using built-in specs.
>> > > > COLLECT_GCC=/Applications/mesasdk/bin/gfortran.exec
>> > > >
>> COLLECT_LTO_WRAPPER=/Applications/mesasdk/libexec/gcc/x86_64-apple-darwin18.2.0/8.3.0/lto-wrapper
>> > > > Target: x86_64-apple-darwin18.2.0
>> > > > Configured with: /Users/townsend/devel/mesasdk-src/gcc/configure
>> CC='gcc -D_FORTIFY_SOURCE=0' --build=x86_64-apple-darwin18.2.0
>> --prefix=/Applications/mesasdk --with-gmp=/Applications/mesasdk
>> --with-mpfr=/Applications/mesasdk --with-mpc=/Applications/mesasdk
>> --enable-languages=c,c++,fortran --disable-multilib --disable-nls
>> --disable-libsanitizer
>> --with-sysroot=/Users/townsend/devel/mesasdk-src/MacOSX10.12.sdk
>> > > > Thread model: posix
>> > > > gcc version 8.3.0 (GCC)
>> > > >
>> > > > echo $MESASDK_ROOT: /Applications/mesasdk
>> > > >
>> > > > echo $PATH:
>> /Applications/mesasdk/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/opt/X11/bin
>> > > >
>> > > > echo $MESA_DIR:
>> > > > /Users/chloekeeling/Research/Code/Mesa/mesa
>> > > >
>> > > >
>> > > > Thanks for the help.
>> > > >
>> > > > -Chloe Sandoval
>> > > >
>> > > >
>> > > >
>> > > >
>> > > >
>> > > >
>> > > >
>> > > >
>> <tmp.txt><build.log><config.log>_______________________________________________
>> > > > mesa-users at lists.mesastar.org
>> > > > https://lists.mesastar.org/mailman/listinfo/mesa-users
>> > > >
>> > >
>> >
>>
>> _______________________________________________
>> mesa-users at lists.mesastar.org
>> https://lists.mesastar.org/mailman/listinfo/mesa-users
>>
>>
>
> --
> Amber Lauer
> Postdoctoral Researcher
> Triangle Universities Nuclear Lab
> Duke University
> amber.lauer at tunl.duke.edu <amber.lauer at duke.edu>
>
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