[Mesa-users] Installation r11701 getting stuck on kap data

Wed Jul 3 23:27:29 EDT 2019

Dear all,

I am trying to install mesa r11701 with mesa sdk, the version of early May
this year. The installation stops at the kap-folder. See below for the
error, which I cannot reproduce, and the second error that I can reproduce.
I have attached the full build log, which includes the environmental
variables.
The machine I am using is a SGI ICE8400EX (the 'debrecen' machine described
here:https://wiki.niif.hu/index.php?title=NIIF_HPC_(English)), but it's a
little outdated and won't be updated anymore. I hope this isn't the problem.
I have not been able to find a similar issue on the mesa archive.

Thanks for your help!

Jacqueline

After I unzip the mesa folder, clean the folder, and then compile mesa,
this message pops up:

FC ../ceos

mesa/eos has been built, tested, and exported.

************************************************

/home/mavfoe2/mesa-r11701/kap

installing mesa kap data.

create kap_data

xz -d kap_data.tar.xz

xz: kap_data.tar: Cannot set the file group: Invalid argument

I am unable to reproduce this error. When I try to compile mesa a second
time (after ./clean), I get this message:

FC ../ceos

mesa/eos has been built, tested, and exported.

************************************************

/home/mavfoe2/mesa-r11701/kap

installing mesa kap data.

create kap_data

xz -d kap_data.tar.xz

xz: kap_data.tar: File exists

And this error remains after I clean and compile again.
I then tried to proceed further by cleaning and compiling the kap folder,
and then recompiling the mesa folder (without ./clean):

DEBRECEN[service0] ~/mesa-r11701 (0)$ cd kap

DEBRECEN[service0] ~/mesa-r11701/kap (0)$ ./clean

DEBRECEN[service0] ~/mesa-r11701/kap (0)$ ./mk

MAKEDEPF90

COMPILE_CMD ../public/kap_def.f90

COMPILE_CMD ../private/cubic_interpolator.f90

COMPILE_CMD ../private/op_def.f90

COMPILE_LEGACY_NOCHECKS ../private/op_load.f

COMPILE_LEGACY_NOCHECKS ../private/op_common.f

COMPILE_LEGACY_NOCHECKS ../private/op_ev.f

COMPILE_LEGACY_NOCHECKS ../private/op_osc.f

COMPILE_LEGACY_NOCHECKS ../private/op_radacc.f

COMPILE_NO_CHECKS ../private/op_eval.f

COMPILE_CMD ../private/kap_eval_support.f90

COMPILE_CMD ../private/condint.f90

COMPILE_CMD ../private/load_co_kap.f90

COMPILE_CMD ../private/kap_aesopus.f90

COMPILE_CMD ../private/kapcn.f90

COMPILE_CMD ../private/load_kap.f90

COMPILE_CMD ../private/kap_eval_fixed.f90

COMPILE_CMD ../private/kap_eval_co.f90

COMPILE_CMD ../private/kap_eval.f90

COMPILE_CMD ../public/kap_lib.f90

LIB_TOOL libkap.a

But this gave me the same error again.
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MESA Version
11701

uname -a
Linux service0 3.0.101-0.47.55-default #1 SMP Thu May 28 08:25:11 UTC 2015 (dc083ee) x86_64 x86_64 x86_64 GNU/Linux

gfortran -v
Using built-in specs.
COLLECT_GCC=/home/mavfoe2/mesasdk20190503/bin/gfortran.exec
COLLECT_LTO_WRAPPER=/mnt/nfs3/home/mavfoe2/mesasdk20190503/bin/../libexec/gcc/x86_64-pc-linux-gnu/8.3.0/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: /root/sdk2/build/gcc/configure CC= --build=x86_64-pc-linux-gnu --prefix=/root/mesasdk --with-gmp=/root/mesasdk --with-mpfr=/root/mesasdk --with-mpc=/root/mesasdk --enable-languages=c,c++,fortran --disable-multilib --disable-nls --disable-libsanitizer --enable-clocale=generic
Thread model: posix
gcc version 8.3.0 (GCC)

$MESASDK_ROOT
/home/mavfoe2/mesasdk20190503

MESASDK version
x86_64-linux-20190503

$PATH
/home/mavfoe2/mesasdk20190503/bin:/opt/nce/packages/global/sgi/perfboost/1.09/bin:/opt/nce/packages/global/db/5.3.21/sbin:/opt/nce/packages/global/db/5.3.21/bin:/opt/nce/packages/global/xmlsec1/1.2.20/bin:/opt/nce/packages/global/globus/4.2.1/sbin:/opt/nce/packages/global/globus/4.2.1/bin:/opt/nce/packages/global/arc/5.0.0/bin:/opt/nce/packages/global/arc/5.0.0/sbin:/opt/nce/packages/global/sbank/1.2/src:/opt/nce/packages/global/cmake/2.8.11/bin:/opt/nce/packages/global/python/2.7.5/bin:/opt/nce/packages/global/jdk/1.8.0_151/bin:/opt/nce/packages/global/jdk/1.8.0_151/jre/bin:/opt/nce/packages/global/g09/bin:/opt/nce/packages/global/sgi/mpt/2.09/bin:/opt/intel/composer_xe_2011_sp1.11.339/bin/intel64:/opt/nce/bin:/opt/sgi/slurm/2.2.7/bin:/opt/TurboVNC/bin:/opt/intel/bin:/usr/local/MATLAB/R2011b/bin:/opt/Navisphere/bin:/etc/pki/tls/misc:/usr/kerberos/sbin:/usr/kerberos/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/lib64/mpi/gcc/openmpi/bin:/home/mavfoe2/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib64/jvm/jre/bin:/opt/c3/bin:/opt/ibutils/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/opt/sgi/sbin:/opt/sgi/bin

$MESA_DIR
/home/mavfoe2/mesa-r11701

/home/mavfoe2/mesa-r11701/const
building const package.

make: `../tester' is up to date.
export
done

mesa/const has been built, tested, and exported.

************************************************

/home/mavfoe2/mesa-r11701/utils
building utils package.

make: `../tester' is up to date.
export
done

mesa/utils has been built, tested, and exported.

************************************************

/home/mavfoe2/mesa-r11701/crlibm
building crlibm package.

make: `libf2crlibm.a' is up to date.
make: `libf2crlibm.a' is up to date.
make: `../tester' is up to date.
export
done

mesa/crlibm has been built, tested, and exported.

************************************************

/home/mavfoe2/mesa-r11701/mtx
building mtx package.

make: Nothing to be done for `all'.
export
done

mesa/mtx has been built, tested, and exported.

************************************************

/home/mavfoe2/mesa-r11701/num
building num package.

make: Nothing to be done for `all'.
export
done

mesa/num has been built, tested, and exported.

************************************************

/home/mavfoe2/mesa-r11701/interp_1d
building interp_1d package.

make: `../tester' is up to date.
export
done

mesa/interp_1d has been built, tested, and exported.

************************************************

/home/mavfoe2/mesa-r11701/interp_2d
building interp_2d package.

make: Nothing to be done for `all'.
export
done

mesa/interp_2d has been built, tested, and exported.

************************************************

/home/mavfoe2/mesa-r11701/chem
building chem package.

make: `../tester' is up to date.
export
done

mesa/chem has been built, tested, and exported.

************************************************

/home/mavfoe2/mesa-r11701/colors
building colors package.

make: `../tester' is up to date.
export
done

mesa/colors has been built, tested, and exported.

************************************************

/home/mavfoe2/mesa-r11701/eos
building eos package.

make: Nothing to be done for `all'.
export
done
make: `../ceos' is up to date.
make: `../run/ceos' is up to date.
make: `../run/ceos' is up to date.
make: `../run/ceos' is up to date.

mesa/eos has been built, tested, and exported.

************************************************

/home/mavfoe2/mesa-r11701/kap
installing mesa kap data.

create kap_data
xz -d kap_data.tar.xz
xz: kap_data.tar: File exists