[Mesa-users] Installation of new version.
Ben Pepper
ben.pepper2012 at gmail.com
Wed Apr 3 11:54:58 EDT 2019
Hi All,
Rich, here is the output you asked to see:
processor : 0
vendor_id : GenuineIntel
cpu family : 6
model : 42
model name : Intel(R) Core(TM) i7-2600K CPU @ 3.40GHz
stepping : 7
microcode : 0x2e
cpu MHz : 1627.243
cache size : 8192 KB
physical id : 0
siblings : 8
core id : 0
cpu cores : 4
apicid : 0
initial apicid : 0
fpu : yes
fpu_exception : yes
cpuid level : 13
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov
pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx
rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology
nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx
est tm2 ssse3 cx16 xtpr pdcm pcid sse4_1 sse4_2 popcnt
tsc_deadline_timer aes xsave avx lahf_lm epb pti ssbd ibrs ibpb stibp
tpr_shadow vnmi flexpriority ept vpid xsaveopt dtherm ida arat pln pts
flush_l1d
bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf
bogomips : 6784.80
clflush size : 64
cache_alignment : 64
address sizes : 36 bits physical, 48 bits virtual
power management:
processor : 1
vendor_id : GenuineIntel
cpu family : 6
model : 42
model name : Intel(R) Core(TM) i7-2600K CPU @ 3.40GHz
stepping : 7
microcode : 0x2e
cpu MHz : 1654.558
cache size : 8192 KB
physical id : 0
siblings : 8
core id : 1
cpu cores : 4
apicid : 2
initial apicid : 2
fpu : yes
fpu_exception : yes
cpuid level : 13
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov
pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx
rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology
nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx
est tm2 ssse3 cx16 xtpr pdcm pcid sse4_1 sse4_2 popcnt
tsc_deadline_timer aes xsave avx lahf_lm epb pti ssbd ibrs ibpb stibp
tpr_shadow vnmi flexpriority ept vpid xsaveopt dtherm ida arat pln pts
flush_l1d
bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf
bogomips : 6784.80
clflush size : 64
cache_alignment : 64
address sizes : 36 bits physical, 48 bits virtual
power management:
processor : 2
vendor_id : GenuineIntel
cpu family : 6
model : 42
model name : Intel(R) Core(TM) i7-2600K CPU @ 3.40GHz
stepping : 7
microcode : 0x2e
cpu MHz : 1775.880
cache size : 8192 KB
physical id : 0
siblings : 8
core id : 2
cpu cores : 4
apicid : 4
initial apicid : 4
fpu : yes
fpu_exception : yes
cpuid level : 13
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov
pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx
rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology
nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx
est tm2 ssse3 cx16 xtpr pdcm pcid sse4_1 sse4_2 popcnt
tsc_deadline_timer aes xsave avx lahf_lm epb pti ssbd ibrs ibpb stibp
tpr_shadow vnmi flexpriority ept vpid xsaveopt dtherm ida arat pln pts
flush_l1d
bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf
bogomips : 6784.80
clflush size : 64
cache_alignment : 64
address sizes : 36 bits physical, 48 bits virtual
power management:
processor : 3
vendor_id : GenuineIntel
cpu family : 6
model : 42
model name : Intel(R) Core(TM) i7-2600K CPU @ 3.40GHz
stepping : 7
microcode : 0x2e
cpu MHz : 1612.199
cache size : 8192 KB
physical id : 0
siblings : 8
core id : 3
cpu cores : 4
apicid : 6
initial apicid : 6
fpu : yes
fpu_exception : yes
cpuid level : 13
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov
pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx
rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology
nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx
est tm2 ssse3 cx16 xtpr pdcm pcid sse4_1 sse4_2 popcnt
tsc_deadline_timer aes xsave avx lahf_lm epb pti ssbd ibrs ibpb stibp
tpr_shadow vnmi flexpriority ept vpid xsaveopt dtherm ida arat pln pts
flush_l1d
bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf
bogomips : 6784.80
clflush size : 64
cache_alignment : 64
address sizes : 36 bits physical, 48 bits virtual
power management:
processor : 4
vendor_id : GenuineIntel
cpu family : 6
model : 42
model name : Intel(R) Core(TM) i7-2600K CPU @ 3.40GHz
stepping : 7
microcode : 0x2e
cpu MHz : 1849.274
cache size : 8192 KB
physical id : 0
siblings : 8
core id : 0
cpu cores : 4
apicid : 1
initial apicid : 1
fpu : yes
fpu_exception : yes
cpuid level : 13
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov
pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx
rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology
nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx
est tm2 ssse3 cx16 xtpr pdcm pcid sse4_1 sse4_2 popcnt
tsc_deadline_timer aes xsave avx lahf_lm epb pti ssbd ibrs ibpb stibp
tpr_shadow vnmi flexpriority ept vpid xsaveopt dtherm ida arat pln pts
flush_l1d
bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf
bogomips : 6784.80
clflush size : 64
cache_alignment : 64
address sizes : 36 bits physical, 48 bits virtual
power management:
processor : 5
vendor_id : GenuineIntel
cpu family : 6
model : 42
model name : Intel(R) Core(TM) i7-2600K CPU @ 3.40GHz
stepping : 7
microcode : 0x2e
cpu MHz : 1725.826
cache size : 8192 KB
physical id : 0
siblings : 8
core id : 1
cpu cores : 4
apicid : 3
initial apicid : 3
fpu : yes
fpu_exception : yes
cpuid level : 13
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov
pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx
rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology
nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx
est tm2 ssse3 cx16 xtpr pdcm pcid sse4_1 sse4_2 popcnt
tsc_deadline_timer aes xsave avx lahf_lm epb pti ssbd ibrs ibpb stibp
tpr_shadow vnmi flexpriority ept vpid xsaveopt dtherm ida arat pln pts
flush_l1d
bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf
bogomips : 6784.80
clflush size : 64
cache_alignment : 64
address sizes : 36 bits physical, 48 bits virtual
power management:
processor : 6
vendor_id : GenuineIntel
cpu family : 6
model : 42
model name : Intel(R) Core(TM) i7-2600K CPU @ 3.40GHz
stepping : 7
microcode : 0x2e
cpu MHz : 1792.304
cache size : 8192 KB
physical id : 0
siblings : 8
core id : 2
cpu cores : 4
apicid : 5
initial apicid : 5
fpu : yes
fpu_exception : yes
cpuid level : 13
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov
pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx
rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology
nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx
est tm2 ssse3 cx16 xtpr pdcm pcid sse4_1 sse4_2 popcnt
tsc_deadline_timer aes xsave avx lahf_lm epb pti ssbd ibrs ibpb stibp
tpr_shadow vnmi flexpriority ept vpid xsaveopt dtherm ida arat pln pts
flush_l1d
bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf
bogomips : 6784.80
clflush size : 64
cache_alignment : 64
address sizes : 36 bits physical, 48 bits virtual
power management:
processor : 7
vendor_id : GenuineIntel
cpu family : 6
model : 42
model name : Intel(R) Core(TM) i7-2600K CPU @ 3.40GHz
stepping : 7
microcode : 0x2e
cpu MHz : 2104.373
cache size : 8192 KB
physical id : 0
siblings : 8
core id : 3
cpu cores : 4
apicid : 7
initial apicid : 7
fpu : yes
fpu_exception : yes
cpuid level : 13
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov
pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx
rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology
nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx
est tm2 ssse3 cx16 xtpr pdcm pcid sse4_1 sse4_2 popcnt
tsc_deadline_timer aes xsave avx lahf_lm epb pti ssbd ibrs ibpb stibp
tpr_shadow vnmi flexpriority ept vpid xsaveopt dtherm ida arat pln pts
flush_l1d
bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf
bogomips : 6784.80
clflush size : 64
cache_alignment : 64
address sizes : 36 bits physical, 48 bits virtual
power management:
Warrick, I did not install the mesa-r10398, so I am unsure of how it
was installed, it was done by my departement when I asked for a
computer and the programmes and software that I would like to use. So
I also don't know, apologies.
Cheers,
Ben
On Wed, 3 Apr 2019 at 05:09, Warrick Ball <W.H.Ball at bham.ac.uk> wrote:
>
> Not sure if this helps at all but the `$PATH` variable looks odd too
>
> ```
> echo $PATH: /home/ppybp5/mesasdk/bin:/usr/local/mesasdk/bin:/home/ppybp5/bin:/home/ppybp5/.local/bin:/usr/local/mesasdk/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/bin:/usr/local/Miniconda3/bin:/usr/local/mesa-r10398
> ```
>
> While I agree everything seems to be linked correctly to the first SDK,
> the second path in `$PATH` is another SDK. That, as well as the MESA
> directory on the end, appears to be under root space, not user space. I
> presume this means at some point Ben installed MESA r10398 and another SDK
> with `sudo`? Also, I can't think of a reason for a $MESA_DIR to be in
> `$PATH` anyway.
>
> Cheers,
> Warrick
>
> ------------
> Warrick Ball
> Postdoc, School of Physics and Astronomy
> University of Birmingham, Edgbaston, Birmingham B15 2TT
> W.H.Ball at bham.ac.uk
> +44 (0)121 414 4552
>
>
> On Tue, 2 Apr 2019, mesa-users at lists.mesastar.org wrote:
>
> > I notice that a previous mesa folder for 10398 seems to be in the $PATH. :
> >
> > /usr/local/mesa-r10398
> >
> > is it possible this is intefering?
> >
> > On Tue, Apr 2, 2019 at 4:18 PM RICHARD H D TOWNSEND via Mesa-users <mesa-users at lists.mesastar.org> wrote:
> > Hi Ben (cc'ing mesa-users, since we should keep them in the loop) --
> >
> > This all looks fine, so my hunch that something was going wrong with libraries doesn't seem to bear out.
> >
> > For those reading this thread: what's happening is that show_rates on Ben's machine is giving slightly different output in the last (decimal) significant digit. Not sure whether there is some
> > code in rates that isn't using crlibm, or whether this is a fundamental breakdown of bit-for-bit compatibility.
> >
> > Ben, it would be interesting to see what processor your computer uses. Can you post the output from 'cat /proc/cpuinfo'.
> >
> > cheers,
> >
> > Rich
> >
> > > On Apr 2, 2019, at 3:03 PM, Ben Pepper <ben.pepper2012 at gmail.com> wrote:
> > >
> > > Hi Rich,
> > >
> > > Here it is:
> > >
> > > ppybp5 at astroben:~/mesa$ ldd /home/ppybp5/mesa/rates/test/show_rates
> > > linux-vdso.so.1 => (0x00007fffe69e3000)
> > > liblapack.so => /home/ppybp5/mesasdk/lib/liblapack.so (0x00007f5c67086000)
> > > libxblas.so => /home/ppybp5/mesasdk/lib/libxblas.so (0x00007f5c66984000)
> > > libblas.so => /home/ppybp5/mesasdk/lib/libblas.so (0x00007f5c666f8000)
> > > libhdf5_fortran.so.102 =>
> > > /home/ppybp5/mesasdk/lib/libhdf5_fortran.so.102 (0x00007f5c664ac000)
> > > libhdf5.so.103 => /home/ppybp5/mesasdk/lib/libhdf5.so.103 (0x00007f5c65e99000)
> > > libz.so.1 => /lib/x86_64-linux-gnu/libz.so.1 (0x00007f5c65c7f000)
> > > libgfortran.so.5 => /home/ppybp5/mesasdk/lib64/libgfortran.so.5
> > > (0x00007f5c658ed000)
> > > libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007f5c655e4000)
> > > libgomp.so.1 => /home/ppybp5/mesasdk/lib64/libgomp.so.1 (0x00007f5c653b4000)
> > > libgcc_s.so.1 => /home/ppybp5/mesasdk/lib64/libgcc_s.so.1 (0x00007f5c6519c000)
> > > libquadmath.so.0 => /home/ppybp5/mesasdk/lib64/libquadmath.so.0
> > > (0x00007f5c64f5c000)
> > > libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0 (0x00007f5c64d3f000)
> > > libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f5c64975000)
> > > librt.so.1 => /lib/x86_64-linux-gnu/librt.so.1 (0x00007f5c6476d000)
> > > libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007f5c64569000)
> > > /lib64/ld-linux-x86-64.so.2 (0x00007f5c679f3000)
> > >
> > > Cheers,
> > >
> > > Ben
> > >
> > > On Tue, 2 Apr 2019 at 16:24, RICHARD H D TOWNSEND
> > > <townsend at astro.wisc.edu> wrote:
> > >>
> > >> Hi Ben --
> > >>
> > >> Thanks for your report. Can you post the output from the following command:
> > >>
> > >> ldd /home/ppybp5/mesa/rates/test/show_rates
> > >>
> > >> This will help me see whether MESA is using the SDK libraries for calculations, or some other libraries present on your system.
> > >>
> > >> cheers,
> > >>
> > >> Rich
> > >>
> > >>> On Apr 2, 2019, at 2:15 PM, Ben Pepper via Mesa-users <mesa-users at lists.mesastar.org> wrote:
> > >>>
> > >>> Dear fellow MESA users,
> > >>>
> > >>> I am having some difficulty in installing the new version of MESA
> > >>> (Version 11554). I
> > >>> have downloaded both the main MESA file via the command line given in
> > >>> the site, and also the new SDK file
> > >>> (mesasdk-x86_64-linux-20190315.tar.gz). The problem I have is a
> > >>> build_and_test fail whilst installing the rates folder, the
> > >>> differences between the tmp.txt and the the
> > >>> output are incredibly small. I have attached the related files and
> > >>> information in this email.
> > >>>
> > >>> The following is information on my linux system and also the
> > >>> information requested.
> > >>>
> > >>> Linux version 4.15.0-46-generic (buildd at lgw01-amd64-008) (gcc version
> > >>> 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.10)) #49~16.04.1-Ubuntu
> > >>> SMP Tue Feb 12 17:45:24 UTC 2019
> > >>>
> > >>> uname -a: Linux astroben 4.15.0-46-generic #49~16.04.1-Ubuntu SMP Tue
> > >>> Feb 12 17:45:24 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
> > >>> gfortran -v: Using built-in specs.
> > >>> COLLECT_GCC=/home/ppybp5/mesasdk/bin/gfortran.exec
> > >>>
> > >>> COLLECT_LTO_WRAPPER=/home/ppybp5/mesasdk/bin/../libexec/gcc/x86_64-pc-linux-gnu/8.3.0/lto-wrapper
> > >>> Target: x86_64-pc-linux-gnu
> > >>> Configured with: /root/mesasdk-src/gcc/configure
> > >>> CC=gcc--build=x86_64-pc-linux-gnu
> > >>> --prefix=/root/mesasdk--with-gmp=/root/mesasdk
> > >>> --with-mpfr=/root/mesasdk--with-mpc=/root/mesasdk
> > >>> --enable-languages=c,c++,fortran--disable-multilib --disable-nls
> > >>> --disable-libsanitizer--enable-clocale=generic
> > >>> Thread model: posix
> > >>> gcc version 8.3.0 (GCC)
> > >>> echo $MESASDK_ROOT: /home/ppybp5/mesasdk
> > >>> echo $PATH: /home/ppybp5/mesasdk/bin:/usr/local/mesasdk/bin:/home/ppybp5/bin:/home/ppybp5/.local/bin:/usr/local/mesasdk/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap
> > /bin:/usr/local/Miniconda3/bin:/usr/local/mesa-r10398
> > >>> echo $MESA_DIR: /home/ppybp5/mesa
> > >>>
> > >>> Thank you,
> > >>>
> > >>> Ben Pepper
> > >>> <tmp.txt><build.log>_______________________________________________
> > >>> mesa-users at lists.mesastar.org
> > >>> https://lists.mesastar.org/mailman/listinfo/mesa-users
> > >>>
> > >>
> >
> > _______________________________________________
> > mesa-users at lists.mesastar.org
> > https://lists.mesastar.org/mailman/listinfo/mesa-users
> >
> >
> >
> > --
> > Amber Lauer
> > Postdoctoral Researcher
> > Triangle Universities Nuclear Lab
> > Duke University
> > amber.lauer at tunl.duke.edu
> >
> >
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