[Mesa-users] Install failure r8845

[Kenny Van]

Hi Matthew,

I ran into issues installing MESA on computecanada clusters as well. After
some back and forth with support staff there's now an extra bullet point in
the install faq.

https://docs.computecanada.ca/wiki/Installing_software_in_your_home_directory

but try

module --force purge

to strip it down to the barebones OS before loading in MESASDK and try
installing again.

Best

On 12 February 2018 at 09:40, RICHARD H D TOWNSEND via Mesa-users <
mesa-users at lists.mesastar.org> wrote:

> Hi Matthew —
>
> You’re problem has got me stumped. It seems as though your system C
> library is missing some routines.
>
> Could you bring this up with your cluster sysadmin, to see if they have
> any suggestions?
>
> cheers,
>
> Rich
>
> On Feb 12, 2018, at 10:37 AM, Matthew Clayton via Mesa-users <
> mesa-users at lists.mesastar.org> wrote:
>
> Hi Amber,
>
> A good point, but unfortunately doing that hasn't got rid the error.
>
> Matthew
> ------------------------------
> *From:* amber lauer [amber.lauer at tunl.duke.edu]
> *Sent:* 11 February 2018 21:37
> *To:* Matthew Clayton
> *Cc:* RICHARD H D TOWNSEND; mesa-users at lists.mesastar.org
> *Subject:* Re: [Mesa-users] Install failure r8845
>
> ​Just a reminder, in case you don't already know: make sure to do ./clean
> before you try and install again, especially when you switch sdk's.​
>
> On Sat, Feb 10, 2018 at 11:23 AM, Matthew Clayton via Mesa-users <
> mesa-users at lists.mesastar.org> wrote:
>
>> Hi Rich,
>> Here is the output from that command
>>
>> GNU C Library (GNU libc) stable release version 2.24, by Roland McGrath
>> et al.
>> Copyright (C) 2016 Free Software Foundation, Inc.
>> This is free software; see the source for copying conditions.
>> There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A
>> PARTICULAR PURPOSE.
>> Compiled by GNU CC version 5.3.0.
>> Available extensions:
>>     crypt add-on version 2.1 by Michael Glad and others
>>     GNU Libidn by Simon Josefsson
>>     Native POSIX Threads Library by Ulrich Drepper et al
>>     BIND-8.2.3-T5B
>> libc ABIs: UNIQUE IFUNC
>> For bug reporting instructions, please see:
>> <http://www.gnu.org/software/libc/bugs.html>.
>>
>> Cheers,
>> Matthew
>> ------------------------------
>> *From:* RICHARD H D TOWNSEND [townsend at astro.wisc.edu]
>> *Sent:* 10 February 2018 16:12
>> *To:* Matthew Clayton
>> *Cc:* Aaron Dotter; mesa-users at lists.mesastar.org
>>
>> *Subject:* Re: [Mesa-users] Install failure r8845
>>
>> Hi Matthew —
>>
>> Can you post the output of the command
>>
>> /cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lib/libc.so.6
>> <http://soft.computecanada.ca/nix/var/nix/profiles/16.09/lib/libc.so.6:>
>>
>> cheers,
>>
>> Rich
>>
>> On Feb 10, 2018, at 9:59 AM, Matthew Clayton via Mesa-users <
>> mesa-users at lists.mesastar.org> wrote:
>>
>> Here it is:
>>
>> ./tester: relocation error: /cvmfs/soft.computecanada.ca/n
>> ix/var/nix/profiles/16.09/lib/libc.so.6: symbol _dl_find_dso_for_object,
>> version GLIBC_PRIVATE not defined in file ld-linux-x86-64.so.2 with link
>> time reference
>>
>>
>> Matthew
>> ------------------------------
>> *From:* Aaron Dotter [aaron.dotter at gmail.com]
>> *Sent:* 10 February 2018 15:50
>> *To:* Matthew Clayton
>> *Cc:* mesa-users at lists.mesastar.org
>> *Subject:* Re: [Mesa-users] Install failure r8845
>>
>> OK, then please post the contents of const/test/tmp.txt.
>>
>>
>>
>> On Sat, Feb 10, 2018 at 10:43 AM, Matthew Clayton <matthew.clayton at exete
>> r.ox.ac.uk>wrote:
>>
>>> Hi Aaron,
>>>
>>> Thanks for getting back to me so quickly. Unfortunately I gave it a try
>>> with the sdk version you suggested and I got the same error.
>>>
>>> Cheers,
>>>
>>> Matthew
>>> ------------------------------
>>> *From:* Aaron Dotter [aaron.dotter at gmail.com]
>>> *Sent:* 10 February 2018 15:31
>>> *To:* Matthew Clayton
>>> *Cc:* mesa-users at lists.mesastar.org
>>> *Subject:* Re: [Mesa-users] Install failure r8845
>>>
>>> Hi Matthew,
>>>
>>> It's entirely possible that the build is failing because the SDK version
>>> (August 2017) you're using is newer than MESA r8845 (June 2016).  There is
>>> an SDK release from January 2016 that ought to be compatible.
>>>
>>> Aaron
>>>
>>> On Sat, Feb 10, 2018 at 10:26 AM, Matthew Clayton via Mesa-users <
>>> mesa-users at lists.mesastar.org> wrote:
>>>
>>>> Hi there,
>>>>
>>>> I'm trying to install MESA version 8845 using SDK version
>>>> x86_64-linux-20170802 on a linux cluster.
>>>> ./install fails almost immediately with:
>>>>
>>>>    gfortran -fopenmp -o ../tester test_const.o -L../../make -lconst
>>>>
>>>>
>>>>    FAILED
>>>>
>>>>
>>>>    /home/mclayton/project/mclayton/mesa-r8845/const/test
>>>>    TEST FAILED -- compare test_output to tmp.txt
>>>>
>>>>
>>>>    /home/mclayton/project/mclayton/mesa-r8845/const
>>>>    ./build_and_test FAILED
>>>>
>>>> I've tried using the latest version of the sdk, which seems to get past
>>>> the prereqs check just fine, and I get the same error on ./install.
>>>> Any ideas?
>>>>
>>>> Cheers,
>>>>
>>>> Matthew
>>>>
>>>> _______________________________________________
>>>> mesa-users at lists.mesastar.org
>>>> https://lists.mesastar.org/mailman/listinfo/mesa-users
>>>>
>>>>
>>>>
>>>
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>
>
> --
> Amber Lauer
> Postdoctoral Researcher
> Triangle University Nuclear Lab
> Duke University
> amber.lauer at tunl.duke.edu <amber.lauer at duke.edu>
> _______________________________________________
> mesa-users at lists.mesastar.org
> https://lists.mesastar.org/mailman/listinfo/mesa-users
>
>
>
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