[Mesa-users] problem with installing r10000

Rob Farmer r.j.farmer at uva.nl
Wed Oct 18 10:42:13 EDT 2017


Maybe, see if there is a tmp.txt file in MESA_DIR/net/test.

Where did you create the cache directory?

Rob

On 18 October 2017 at 16:32, Alex Serebryanskiy <aserebryanskiy at yahoo.com>
wrote:

> I've manually created "cache" directory and that error disappeared.  But
> now I have the following error
>
> /home/alex/Work/mesa-r10000/net/test
> FAILED
>
> /home/alex/Work/mesa-r10000/net
> ./build_and_test FAILED
>
> probably the same issue?
>
> Alex
>
> ===========================
> Aleksander Serebryanskiy, PhD
> Fesenkov Astrophysical Institute,
> Observatory 23, 050020 Almaty, Kazakhstan
> tel: 8(747)9393892
> e-mail: alex at aphi.kz, aserebryanskiy at yahoo.com
>
>
> On Wednesday, October 18, 2017, 7:49:47 PM GMT+6, Rob Farmer <
> r.j.farmer at uva.nl> wrote:
>
>
> Hi
> So that error suggests you have a permission problem on the MESA_DIR/data
> folder. MESA during a run will write out several cache files to a local
> directory and then will try to move them to $MESA_DIR/data folder.
>
> What is the output of:
>
> ls -lha $MESA_DIR/data
>
> Also you can try a quick fix to set the environment variable:
>
> export MESA_CACHES_DIR=/some/path/you/can/write/to
>
> Though that will need to be set in your ~/.bashrc so that its used for all
> your mesa runs. Or deleting this folder and re-downloading mesa should get
> you a folder with the right permissions preset.
>
> Rob
>
>
>
>
>
> On 18 October 2017 at 15:34, Alex Serebryanskiy <aserebryanskiy at yahoo.com>
> wrote:
>
> Hello Rob,
>
> I did what you suggested. The file is attached. Indeed, this time I see
> some error messages.
>
> Thank you,
>
> Alex
>
> ===========================
> Aleksander Serebryanskiy, PhD
> Fesenkov Astrophysical Institute,
> Observatory 23, 050020 Almaty, Kazakhstan
> tel: 8(747)9393892
> e-mail: alex at aphi.kz, aserebryanskiy at yahoo.com
>
>
> On Wednesday, October 18, 2017, 5:31:14 PM GMT+6, Rob Farmer <
> r.j.farmer at uva.nl> wrote:
>
>
> Hi
> Can you please run the following command
>
> cd $MESA_DIR && ./clean && ./mk 2>&1 | tee build.log
>
> This will clean the MESA_DIR of the part compiled bits of mesa then build
> it again, logging the output to a file called build.log. Please send this
> file (build.log)
>
> Thanks
> Rob
>
>
> On 18 October 2017 at 12:51, Alex Serebryanskiy <aserebryanskiy at yahoo.com>
> wrote:
>
> Hi Rob,
>
> there is no such file (tmp.txt) in $MESA_DIR/rates/test directory
>
> thanks,
>
> Alex
> ===========================
> Aleksander Serebryanskiy, PhD
> Fesenkov Astrophysical Institute,
> Observatory 23, 050020 Almaty, Kazakhstan
> tel: 8(747)9393892
> e-mail: alex at aphi.kz, aserebryanskiy at yahoo.com
>
>
> On Wednesday, October 18, 2017, 4:27:42 PM GMT+6, Rob Farmer <
> r.j.farmer at uva.nl> wrote:
>
>
> Hi
>
> As pointed out by aaron (and missed by me) the error message comes form
> rates not the eos. So there should be a tmp.txt file in the
> $MESA_DIR/rates/test folder
>
> Rob
>
> On 18 October 2017 at 12:25, Alex Serebryanskiy <aserebryanskiy at yahoo.com>
> wrote:
>
> Hi Rob,
>
> Thanks for the suggestion!
> The tmp.txt is quite a long file (attached). I found that this file does
> not contain any error message though.
>
> Alex
>
> ===========================
> Aleksander Serebryanskiy, PhD
> Fesenkov Astrophysical Institute,
> Observatory 23, 050020 Almaty, Kazakhstan
> tel: 8(747)9393892
> e-mail: alex at aphi.kz, aserebryanskiy at yahoo.com
>
>
> On Wednesday, October 18, 2017, 4:18:05 PM GMT+6, Rob Farmer <
> r.j.farmer at uva.nl> wrote:
>
>
> Hi
> If you look in the folder $MESA_DIR/eos/test there should be a file called
> tmp.txt. Please send that, as that should contain an error message about
> what happened
>
> Thanks
> Rob
>
> On 18 October 2017 at 12:06, Alex Serebryanskiy via Mesa-users <
> mesa-users at lists.mesastar.org > wrote:
>
> Dear MESA users,
>
> I have a problem with installing mesa-r10000 on Ubuntu (Linux version
> 4.4.0-97-generic, "Ubuntu 16.04.3 LTS"), mesasdk version of September 21,
> 2017.
> The problem is in eos:
> /home/alex/Work/mesa-r10000/ rates/test
> FAILED
> /home/alex/Work/mesa-r10000/ rates
> ./build_and_test FAILED
>
> the last compiling command (no error at that stage) is:
> gfortran -fopenmp -o ../show_rates reaction_rate_from_cache.o -L../../make
> -lrates -L../../../lib -lchem -leos -linterp_2d -linterp_1d -lnum
> -lf2crlibm -lcrlibm -lm
> tx -lconst -lutils `mesasdk_lapack_link` `mesasdk_blas_link`
> `mesasdk_hdf5_link`
>
> will very much appreciate if anyone can help me with this,
>
> thanks,
>
>
> Alex
>
> ===========================
> Aleksander Serebryanskiy, PhD
> Fesenkov Astrophysical Institute,
> Observatory 23, 050020 Almaty, Kazakhstan
> tel: 8(747)9393892
> e-mail: alex at aphi.kz, aserebryanskiy at yahoo.com
>
>
>
>
>
>
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