[Mesa-users] problem with installing r10000

[Alex Serebryanskiy]

Hi Rob,
Here is the output of the ls -lha $MESA_DIR/data
total 188Kdrwxr-xr-x 10 alex users 4,0K  18 19:26 .drwxr-xr-x 30 alex users 4,0K  18 19:28 ..drwxr-xr-x  2 alex users 4,0K  18 19:23 chem_datadrwxr-xr-x  2 alex users 4,0K  18 19:23 colors_datadrwxr-xr-x  3 alex users 4,0K  18 19:25 eosDT_datadrwxr-xr-x  3 alex users 4,0K  18 19:25 eosPT_datadrwxr-xr-x  3 alex users 148K  18 19:26 kap_datadrwxr-xr-x  3 alex users 4,0K  12 09:37 net_datadrwxr-xr-x  5 alex users 4,0K  18 19:26 rates_datadrwxr-xr-x 10 alex users 4,0K  12 09:37 star_data-rwxr-xr-x  1 alex users    6  12 09:36 version_number
I also found that there is no such directory "cache" in ../../eos/data/eosDT_data/ directory.
thanks! Alex
===========================Aleksander Serebryanskiy, PhDFesenkov Astrophysical Institute,Observatory 23, 050020 Almaty, Kazakhstan 
tel: 8(747)9393892e-mail: alex at aphi.kz, aserebryanskiy at yahoo.com 

    On Wednesday, October 18, 2017, 7:49:47 PM GMT+6, Rob Farmer <r.j.farmer at uva.nl> wrote:  
 
 HiSo that error suggests you have a permission problem on the MESA_DIR/data folder. MESA during a run will write out several cache files to a local directory and then will try to move them to $MESA_DIR/data folder. 

What is the output of:

ls -lha $MESA_DIR/data

Also you can try a quick fix to set the environment variable:

export MESA_CACHES_DIR=/some/path/you/can/write/to
Though that will need to be set in your ~/.bashrc so that its used for all your mesa runs. Or deleting this folder and re-downloading mesa should get you a folder with the right permissions preset.

Rob





On 18 October 2017 at 15:34, Alex Serebryanskiy <aserebryanskiy at yahoo.com> wrote:

Hello Rob,
I did what you suggested. The file is attached. Indeed, this time I see some error messages.
Thank you,
Alex 

===========================Aleksander Serebryanskiy, PhDFesenkov Astrophysical Institute,Observatory 23, 050020 Almaty, Kazakhstan 
tel: 8(747)9393892e-mail: alex at aphi.kz, aserebryanskiy at yahoo.com

On Wednesday, October 18, 2017, 5:31:14 PM GMT+6, Rob Farmer <r.j.farmer at uva.nl> wrote:

HiCan you please run the following command

cd $MESA_DIR && ./clean && ./mk 2>&1 | tee build.log
This will clean the MESA_DIR of the part compiled bits of mesa then build it again, logging the output to a file called build.log. Please send this file (build.log)

Thanks
Rob


On 18 October 2017 at 12:51, Alex Serebryanskiy<aserebryanskiy at yahoo.com> wrote:

Hi Rob,
there is no such file (tmp.txt) in $MESA_DIR/rates/test directory 

thanks,
Alex===========================Aleksander Serebryanskiy, PhDFesenkov Astrophysical Institute,Observatory 23, 050020 Almaty, Kazakhstan 
tel: 8(747)9393892e-mail: alex at aphi.kz, aserebryanskiy at yahoo.com

On Wednesday, October 18, 2017, 4:27:42 PM GMT+6, Rob Farmer <r.j.farmer at uva.nl> wrote:

Hi

As pointed out by aaron (and missed by me) the error message comes form rates not the eos. So there should be a tmp.txt file in the $MESA_DIR/rates/test folder

Rob

On 18 October 2017 at 12:25, Alex Serebryanskiy<aserebryanskiy at yahoo.com> wrote:

Hi Rob,
Thanks for the suggestion! The tmp.txt is quite a long file (attached). I found that this file does not contain any error message though. 
Alex
===========================Aleksander Serebryanskiy, PhDFesenkov Astrophysical Institute,Observatory 23, 050020 Almaty, Kazakhstan 
tel: 8(747)9393892e-mail: alex at aphi.kz, aserebryanskiy at yahoo.com

On Wednesday, October 18, 2017, 4:18:05 PM GMT+6, Rob Farmer <r.j.farmer at uva.nl> wrote:

Hi
If you look in the folder $MESA_DIR/eos/test there should be a file called tmp.txt. Please send that, as that should contain an error message about what happened

Thanks
Rob

On 18 October 2017 at 12:06, Alex Serebryanskiy via Mesa-users <mesa-users at lists.mesastar.org > wrote:

Dear MESA users,
I have a problem with installing mesa-r10000 on Ubuntu (Linux version 4.4.0-97-generic, "Ubuntu 16.04.3 LTS"), mesasdk version of September 21, 2017.The problem is in eos:
/home/alex/Work/mesa-r10000/ rates/test
FAILED
/home/alex/Work/mesa-r10000/ rates
./build_and_test FAILED

the last compiling command (no error at that stage) is:gfortran -fopenmp -o ../show_rates reaction_rate_from_cache.o -L../../make -lrates -L../../../lib -lchem -leos -linterp_2d -linterp_1d -lnum -lf2crlibm -lcrlibm -lm
tx -lconst -lutils `mesasdk_lapack_link` `mesasdk_blas_link` `mesasdk_hdf5_link`

will very much appreciate if anyone can help me with this,
thanks,

Alex
===========================Aleksander Serebryanskiy, PhDFesenkov Astrophysical Institute,Observatory 23, 050020 Almaty, Kazakhstan 
tel: 8(747)9393892e-mail: alex at aphi.kz, aserebryanskiy at yahoo.com







  
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