[mesa-users] Problems with MESA_DIR variable

Mon Mar 2 11:50:25 EST 2015

Hi, Ehsan and Max!

Thanks for your suggestions! Looks like Max solved part of the problem with
the MESA_DIR. Now, when running the 'high_mass' case, I get this error
message:

############################
argus:high_mass mairan$ pwd
/Users/mairan/MESA/mairan_models/high_mass
argus:high_mass mairan$ ./mk
gfortran -fopenmp -o ../star run_star_extras.o run_star.o  run.o
 -L/Users/mairan/MESA/mesa-r7385/lib -lstar -lionization -latm -lcolors
-lmlt -lnse -lnet -leos -lkap -lrates -lneu -lchem -linterp_2d -linterp_1d
-lnum -lf2crlibm -lcrlibm -lmtx -lconst -lutils -lmesaklu
`mesasdk_lapack_link` `mesasdk_blas_link` `mesasdk_pgplot_link`
`mesasdk_se_link`
argus:high_mass mairan$ ./rn
DATE: 2015-03-02
TIME: 11:45:34
 Failed to open control namelist file ../inlist_test_suite
 ierr from read_star_job inlist
STOP 1
DATE: 2015-03-02
TIME: 11:45:34
argus:high_mass mairan$
############################

The requested file lies in $MESA_DIR/star/test_suite/inlist_test_suite, but
the local inlist file is looking for it one folder above. Do I have to set
it to the full path?

Thank you!
m.

--
Dr. Mairan Teodoro

Research Associate
Department of Physics
Western Michigan University
Kalamazoo MI 49008-5252 USA
mairan.teodoro at wmich.edu

Science Collaborator
NASA Goddard Space Flight Center
8800 Greenbelt Rd.
Greenbelt, MD 20771 USA
Bldg. 34, Rm. 321, Code 667
301-286-6321
mairan.teodoro at nasa.gov
--

On Mon, Mar 2, 2015 at 11:40 AM, Max Katz <maxpkatz at gmail.com> wrote:

> I recently ran into an issue when using a recent version of MESA that the
> test_suite problems now include the line
>
> include ../../test_suite_makefile_prefix
>
>
> in the make/makefile. The sole effect of this source is to set
>
> MESA_DIR = ../../../..
>
>
> So I needed to comment out the reference to this include to get things
> working as expected when you copy a problem outside the MESA hierarchy.
>
> Max Katz
> Department of Physics and Astronomy
> Vice President, Graduate Student Organization
> Stony Brook University
> http://astro.sunysb.edu/mkatz/
>
> On Mon, Mar 2, 2015 at 11:09 AM, Ehsan Moravveji <e.moravveji at gmail.com>
> wrote:
>
>> Dear Mairan,
>> It is always advised not to run the test_suit examples from within your
>> source directory. Instead, you can copy them to wherever on your machine,
>> compile and run it.
>> A full instruction is given in part 1.2 of the following documentation
>> http://mesa.sourceforge.net/starting.html#toc-1-9
>>
>> Having successfully done that, you can set your MESA_DIR in three
>> different ways:
>> 1. to add to the first line in your /make/makefile file, e.g.
>>     MESA_DIR = /Users/me/somewhere/mesa-r7385
>> 2. the first control variable in the &star_job part of inlist is
>> "mesa_dir". You can find it in <mesa-root>/star/defalts/star_job.defaults
>>     then, in your local inlist, you can explicitly set it to wherever
>> path your root mesa directory sits, e.g.
>>     mesa_dir = /Users/me/somewhere/mesa-r7385
>> 3. the third is through setting it up in your ~/.bash_profile, followed
>> by sourcing it.
>>
>> I hope any of these (or a combo) helps you out.
>>
>> Best
>> Ehsan.
>>
>>
>> On Mon, Mar 2, 2015 at 4:48 PM, Mairan Teodoro <mairan.teodoro at gmail.com>
>> wrote:
>>
>>> Hi, all!
>>>
>>> I've just installed MESA on a Macbook Pro (OS X 10.10.2; I've got the
>>> successfully installed message at the end), and I'm trying to run some test
>>> suites. I have successfully ran the tutorial model and everything worked
>>> perfectly fine.
>>>
>>> However, when I try to run the 'high_mass' or the 'massive_rotating'
>>> test suites, I get error messages related (I believe) to the MESA_DIR
>>> variable. I have this variable set in my $HOME/.profile file but it seems
>>> that the code cannot find the files. For example, when trying to run the
>>> 'massive_rotating' test case, this is what I get:
>>>
>>> ##############################
>>> pcp072011pcs: mairan$ cd
>>> MESA/mesa-r7385/star/test_suite/massive_rotating/
>>> pcp072011pcs:massive_rotating mairan$ ./mk
>>> gfortran -fopenmp -o ../star run_star_extras.o run_star.o  run.o
>>>  -L../../../../lib -lstar -lionization -latm -lcolors -lmlt -lnse -lnet
>>> -leos -lkap -lrates -lneu -lchem -linterp_2d -linterp_1d -lnum -lf2crlibm
>>> -lcrlibm -lmtx -lconst -lutils -lmesaklu `mesasdk_lapack_link`
>>> `mesasdk_blas_link` `mesasdk_pgplot_link` `mesasdk_se_link`
>>> pcp072011pcs:massive_rotating mairan$ ./rn
>>> DATE: 2015-03-02
>>> TIME: 10:31:38
>>>  open failed for $MESA_DIR/data/version_number
>>>  please check that mesa_dir is set correctly
>>>  failed in stardata_init
>>>  star_init ierr           2
>>>  before_evolve_loop ierr           2
>>> DATE: 2015-03-02
>>> TIME: 10:31:38
>>> pcp072011pcs:massive_rotating mairan$ echo $MESA_DIR
>>> /Users/mairan/MESA/mesa-r7385
>>> pcp072011pcs:massive_rotating mairan$ pwd
>>> /Users/mairan/MESA/mesa-r7385/star/test_suite/massive_rotating
>>> pcp072011pcs:massive_rotating mairan$
>>> ##############################
>>>
>>> If I try to run the 'high_mass' test case, the error message is as
>>> follows:
>>>
>>> ##############################
>>> /Users/mairan/MESA/mesa-r7385/star/test_suite/high_mass
>>> pcp072011pcs:high_mass mairan$ ./mk
>>> gfortran -fno-range-check -fmax-errors=100  -fprotect-parens
>>> -fno-sign-zero -fopenmp -fbounds-check -Wuninitialized -Warray-bounds -g
>>> -ffree-form -x f95-cpp-input -I../../../../include
>>> -I/Applications/mesasdk/include -c ../src/run_star_extras.f
>>> gfortran -fno-range-check -fmax-errors=100  -fprotect-parens
>>> -fno-sign-zero -fopenmp -fbounds-check -Wuninitialized -Warray-bounds -g
>>> -ffree-form -x f95-cpp-input -I../../../../include
>>> -I/Applications/mesasdk/include -c ../../../../star/job/run_star.f
>>> gfortran -fno-range-check -fmax-errors=100  -fprotect-parens
>>> -fno-sign-zero -fopenmp -fbounds-check -Wuninitialized -Warray-bounds -g
>>> -ffree-form -x f95-cpp-input -I../../../../include
>>> -I/Applications/mesasdk/include -c ../src/run.f
>>> gfortran -fopenmp -o ../star run_star_extras.o run_star.o  run.o
>>>  -L../../../../lib -lstar -lionization -latm -lcolors -lmlt -lnse -lnet
>>> -leos -lkap -lrates -lneu -lchem -linterp_2d -linterp_1d -lnum -lf2crlibm
>>> -lcrlibm -lmtx -lconst -lutils -lmesaklu `mesasdk_lapack_link`
>>> `mesasdk_blas_link` `mesasdk_pgplot_link` `mesasdk_se_link`
>>> pcp072011pcs:high_mass mairan$ ./rn
>>> DATE: 2015-03-02
>>> TIME: 10:47:24
>>>  open failed for $MESA_DIR/data/version_number
>>>  please check that mesa_dir is set correctly
>>>  failed in stardata_init
>>>  star_init ierr           2
>>>  before_evolve_loop ierr           2
>>> DATE: 2015-03-02
>>> TIME: 10:47:24
>>> pcp072011pcs:high_mass mairan$
>>> ##############################
>>>
>>> Does anyone know how to fix this? Any help would be very appreciated.
>>>
>>> Best regards!
>>> m.
>>>
>>> --
>>> Dr. Mairan Teodoro
>>>
>>> Research Associate
>>> Department of Physics
>>> Western Michigan University
>>> Kalamazoo MI 49008-5252 USA
>>> mairan.teodoro at wmich.edu
>>>
>>> Science Collaborator
>>> NASA Goddard Space Flight Center
>>> 8800 Greenbelt Rd.
>>> Greenbelt, MD 20771 USA
>>> Bldg. 34, Rm. 321, Code 667
>>> 301-286-6321
>>> mairan.teodoro at nasa.gov
>>> --
>>>
>>>
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>>
>>
>> --
>> Kind regards
>>
>> Ehsan Moravveji
>> http://moravveji.webs.com/
>>
>>
>> ------------------------------------------------------------------------------
>> Dive into the World of Parallel Programming The Go Parallel Website,
>> sponsored
>> by Intel and developed in partnership with Slashdot Media, is your hub
>> for all
>> things parallel software development, from weekly thought leadership
>> blogs to
>> news, videos, case studies, tutorials and more. Take a look and join the
>> conversation now. http://goparallel.sourceforge.net/
>> _______________________________________________
>> mesa-users mailing list
>> mesa-users at lists.sourceforge.net
>> https://lists.sourceforge.net/lists/listinfo/mesa-users
>>
>>
>
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