[mesa-users] Question

Liliana Novais linovais at gmail.com
Wed Jun 24 12:49:58 EDT 2015 

I just dowload it the one: mesasd-x86_64-linux-20141212.tar.gz...

I did ./clean and followed the instruction on the instalation guide....
http://mesastar.org/teaching-materials/graduate-course-berkeley/installation-guide#sec-2-2

It started to install then block on the tests:
test_banded.o: In function `__test_banded_MOD_test_med':
/home/lnovais/mesa/mtx/test/make/../src/test_banded.f:134: undefined
reference to `dgbsv_'
test_square.o: In function `__test_square_MOD_test_square1':
/home/lnovais/mesa/mtx/test/make/../src/test_square.f:181: undefined
reference to `dgetrf_'
/home/lnovais/mesa/mtx/test/make/../src/test_square.f:187: undefined
reference to `dgetrs_'
test_square.o: In function `__test_square_MOD_test_square2':
/home/lnovais/mesa/mtx/test/make/../src/test_square.f:139: undefined
reference to `dgetrf_'
/home/lnovais/mesa/mtx/test/make/../src/test_square.f:144: undefined
reference to `dgetrs_'
/home/lnovais/mesa/mtx/test/make/../src/test_square.f:150: undefined
reference to `dgetrf_'
/home/lnovais/mesa/mtx/test/make/../src/test_square.f:155: undefined
reference to `dgetrs_'
test_square.o: In function `__test_square_MOD_test_square_inv':
/home/lnovais/mesa/mtx/test/make/../src/test_square.f:68: undefined
reference to `dgetrf_'
/home/lnovais/mesa/mtx/test/make/../src/test_square.f:75: undefined
reference to `dgetrs_'
/home/lnovais/mesa/mtx/test/make/../src/test_square.f:81: undefined
reference to `dgemv_'
/home/lnovais/mesa/mtx/test/make/../src/test_square.f:94: undefined
reference to `dgetrf_'
/home/lnovais/mesa/mtx/test/make/../src/test_square.f:101: undefined
reference to `dgetrs_'
/home/lnovais/mesa/mtx/test/make/../src/test_square.f:106: undefined
reference to `dgemv_'
collect2: error: ld returned 1 exit status
makefile:35: recipe for target 'tester' failed
make: *** [tester] Error 1

/home/lnovais/mesa/mtx/test
FAILED


/home/lnovais/mesa/mtx
./build_and_test FAILED



2015-06-24 17:45 GMT+01:00 Broxton Miles <bjmiles at crimson.ua.edu>:

> This is the output of the gfortan
>> [lnovais at new-host home]$ gfortran -v
>> Using built-in specs.
>> COLLECT_GCC=gfortran
>> COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/5.1.1/lto-wrapper
>> Target: x86_64-redhat-linux
>> Configured with: ../configure --enable-bootstrap
>> --enable-languages=c,c++,objc,obj-c++,fortran,ada,go,lto --prefix=/usr
>> --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=
>> http://bugzilla.redhat.com/bugzilla --enable-shared
>> --enable-threads=posix --enable-checking=release --enable-multilib
>> --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions
>> --enable-gnu-unique-object --enable-linker-build-id
>> --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array
>> --disable-libgcj --with-default-libstdcxx-abi=c++98 --with-isl
>> --enable-libmpx --enable-gnu-indirect-function --with-tune=generic
>> --with-arch_32=i686 --build=x86_64-redhat-linux
>> Thread model: posix
>> gcc version 5.1.1 20150612 (Red Hat 5.1.1-3) (GCC)
>> I just restarted the instalation... and it gives me back the error....
>
> You're not initializing the mesasdk correctly. If you have it initialized
> correctly the output should be something like
>
>> Using built-in specs.
>>
>> COLLECT_GCC=/ccs/home/bjmiles/mesasdk/bin/gfortran.exec
>>
>>
>> COLLECT_LTO_WRAPPER=/autofs/nccs-svm1_home1/bjmiles/mesasdk/bin/../libexec/gcc/x86_64-pc-linux-gnu/4.9.3/lto-wrapper
>>
>> Target: x86_64-pc-linux-gnu
>>
>> Configured with: ./configure CC=gcc --build=x86_64-pc-linux-gnu
>> --prefix=/root/mesasdk --with-gmp=/root/mesasdk --with-mpfr=/root/mesasdk
>> --with-mpc=/root/mesasdk --enable-languages=c,c++,fortran
>> --disable-multilib --disable-nls --disable-libsanitizer
>>
>> Thread model: posix
>>
>> gcc version 4.9.3 20141212 (prerelease) (GCC)
>>
>
>   And like Rich said you need the latest release version of MESA.
>
> Broxton
>
> On Wed, Jun 24, 2015 at 12:37 PM, Liliana Novais <linovais at gmail.com>
> wrote:
>
>> This is the output of the gfortan
>>
>> [lnovais at new-host home]$ gfortran -v
>> Using built-in specs.
>> COLLECT_GCC=gfortran
>> COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/5.1.1/lto-wrapper
>> Target: x86_64-redhat-linux
>> Configured with: ../configure --enable-bootstrap
>> --enable-languages=c,c++,objc,obj-c++,fortran,ada,go,lto --prefix=/usr
>> --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=
>> http://bugzilla.redhat.com/bugzilla --enable-shared
>> --enable-threads=posix --enable-checking=release --enable-multilib
>> --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions
>> --enable-gnu-unique-object --enable-linker-build-id
>> --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array
>> --disable-libgcj --with-default-libstdcxx-abi=c++98 --with-isl
>> --enable-libmpx --enable-gnu-indirect-function --with-tune=generic
>> --with-arch_32=i686 --build=x86_64-redhat-linux
>> Thread model: posix
>> gcc version 5.1.1 20150612 (Red Hat 5.1.1-3) (GCC)
>>
>> I just restarted the instalation... and it gives me back the error....
>>
>> 2015-06-24 17:33 GMT+01:00 Broxton Miles <bjmiles at crimson.ua.edu>:
>>
>>> Let's keep this on the mailing list so make sure you're hitting reply
>>> all.
>>>
>>>  I started again and know I got the following error:
>>>> /home/lnovais/mesasdk/trunk/utils
>>>> building utils package.
>>>> gfortran -fno-range-check  -fopenmp  -I../public -I../private
>>>> -I../../include -Wunused-value -Werror -W -fimplicit-none   -fbounds-check
>>>> -O2 -g -c -ffree-form   ../public/utils_def.f
>>>> gfortran -fno-range-check  -fopenmp  -I../public -I../private
>>>> -I../../include -Wunused-value -Werror -W -fimplicit-none   -fbounds-check
>>>> -O2 -g -c -ffree-form   ../private/utils_isnan_okay.f
>>>> ../private/utils_isnan_okay.f:43.36:
>>>>          is_real_inf = (2*x==x .and. x /= 0)
>>>>                                     1
>>>> Warning: Inequality comparison for REAL(4) at (1)
>>>> ../private/utils_isnan_okay.f:43.24:
>>>>          is_real_inf = (2*x==x .and. x /= 0)
>>>>                         1
>>>> Warning: Equality comparison for REAL(4) at (1)
>>>> ../private/utils_isnan_okay.f:37.31:
>>>>          is_inf = (2*x==x .and. x /= 0)
>>>>                                1
>>>> Warning: Inequality comparison for REAL(8) at (1)
>>>> ../private/utils_isnan_okay.f:37.19:
>>>>          is_inf = (2*x==x .and. x /= 0)
>>>>                    1
>>>> Warning: Equality comparison for REAL(8) at (1)
>>>> makefile:42: recipe for target 'utils_isnan_okay.o' failed
>>>> make: *** [utils_isnan_okay.o] Error 1
>>>> /home/lnovais/mesasdk/trunk/utils/make
>>>> FAILED
>>>>
>>>> /home/lnovais/mesasdk/trunk/utils
>>>> ./build_and_test FAILED
>>>
>>>
>>> I'm not entirely sure of what could be causing that. What is the output
>>> of gfortran --version and echo $MESASDK_ROOT?
>>>
>>> Broxton
>>>
>>>
>>>
>>> On Wed, Jun 24, 2015 at 12:22 PM, Liliana Novais <linovais at gmail.com>
>>> wrote:
>>>
>>>> I started again and know I got the following error:
>>>>
>>>> /home/lnovais/mesasdk/trunk/utils
>>>> building utils package.
>>>>
>>>> gfortran -fno-range-check  -fopenmp  -I../public -I../private
>>>> -I../../include -Wunused-value -Werror -W -fimplicit-none   -fbounds-check
>>>> -O2 -g -c -ffree-form   ../public/utils_def.f
>>>> gfortran -fno-range-check  -fopenmp  -I../public -I../private
>>>> -I../../include -Wunused-value -Werror -W -fimplicit-none   -fbounds-check
>>>> -O2 -g -c -ffree-form   ../private/utils_isnan_okay.f
>>>> ../private/utils_isnan_okay.f:43.36:
>>>>
>>>>          is_real_inf = (2*x==x .and. x /= 0)
>>>>                                     1
>>>> Warning: Inequality comparison for REAL(4) at (1)
>>>> ../private/utils_isnan_okay.f:43.24:
>>>>
>>>>          is_real_inf = (2*x==x .and. x /= 0)
>>>>                         1
>>>> Warning: Equality comparison for REAL(4) at (1)
>>>> ../private/utils_isnan_okay.f:37.31:
>>>>
>>>>          is_inf = (2*x==x .and. x /= 0)
>>>>                                1
>>>> Warning: Inequality comparison for REAL(8) at (1)
>>>> ../private/utils_isnan_okay.f:37.19:
>>>>
>>>>          is_inf = (2*x==x .and. x /= 0)
>>>>                    1
>>>> Warning: Equality comparison for REAL(8) at (1)
>>>> makefile:42: recipe for target 'utils_isnan_okay.o' failed
>>>> make: *** [utils_isnan_okay.o] Error 1
>>>>
>>>> /home/lnovais/mesasdk/trunk/utils/make
>>>> FAILED
>>>>
>>>>
>>>> /home/lnovais/mesasdk/trunk/utils
>>>> ./build_and_test FAILED
>>>>
>>>>
>>>> 2015-06-24 16:49 GMT+01:00 Liliana Novais <linovais at gmail.com>:
>>>>
>>>>> I went to that site and downloaded it then I started to install
>>>>> following the steps I'm gointo to erase all and start again because I
>>>>> must had made a mistake somewhere
>>>>>
>>>>>
>>>>> 2015-06-24 16:43 GMT+01:00 Broxton Miles <bjmiles at crimson.ua.edu>:
>>>>>
>>>>>> Liliana,
>>>>>>
>>>>>> I just have to download it? or do I need to run it also?
>>>>>>>
>>>>>>> I followed the steps on this site:
>>>>>>>
>>>>>>> http://joaofariaresearch.weebly.com/1/post/2012/04/installing-mesa.html
>>>>>>>
>>>>>>
>>>>>>
>>>>>> Yeah, you have to download it and install it/initialize it.
>>>>>>
>>>>>> I would say follow the instructions on the sdk site that pertain to
>>>>>> your particular system:
>>>>>>
>>>>>>
>>>>>> http://www.astro.wisc.edu/~townsend/static.php?ref=mesasdk#toc-Downloads
>>>>>>
>>>>>> Try following those instructions and those of the official MESA page
>>>>>> <http://mesa.sourceforge.net/prereqs.html> and then report back your
>>>>>> results, and we'll go from there.
>>>>>>
>>>>>> Broxton
>>>>>>
>>>>>> On Wed, Jun 24, 2015 at 11:37 AM, Liliana Novais <linovais at gmail.com>
>>>>>> wrote:
>>>>>>
>>>>>>> I just have to download it? or do I need to run it also?
>>>>>>>
>>>>>>> I followed the steps on this site:
>>>>>>>
>>>>>>> http://joaofariaresearch.weebly.com/1/post/2012/04/installing-mesa.html
>>>>>>>
>>>>>>> 2015-06-24 16:34 GMT+01:00 Broxton Miles <bjmiles at crimson.ua.edu>:
>>>>>>>
>>>>>>>> Have you downloaded and initialized the mesasdk?
>>>>>>>>
>>>>>>>> The reason I ask is:
>>>>>>>>
>>>>>>>>> make: gfortran: Command not found
>>>>>>>>
>>>>>>>>
>>>>>>>> It can't find the compiler.
>>>>>>>>
>>>>>>>> Broxton
>>>>>>>>
>>>>>>>> On Wed, Jun 24, 2015 at 11:31 AM, Liliana Novais <
>>>>>>>> linovais at gmail.com> wrote:
>>>>>>>>
>>>>>>>>> Hello,
>>>>>>>>>
>>>>>>>>> I just was able to set the core number and there is another error
>>>>>>>>> on my installation:
>>>>>>>>>
>>>>>>>>> [lnovais at new-host MESA]$ ./install
>>>>>>>>> checking if ndiff is installed ...
>>>>>>>>> no! running install_ndiff
>>>>>>>>> ndiff installed in utils/ndiff/
>>>>>>>>>
>>>>>>>>> /home/lnovais/Programs/MESA/const
>>>>>>>>> building const package.
>>>>>>>>>
>>>>>>>>> gfortran -fno-range-check  -fopenmp  -I../public -I../private
>>>>>>>>> -I../../include -Wunused-value -Werror -W -fimplicit-none   -O2 -c
>>>>>>>>> -ffixed-form -ffixed-line-length-132 ../public/const_def.f
>>>>>>>>> make: gfortran: Command not found
>>>>>>>>> makefile:26: recipe for target 'const_def.o' failed
>>>>>>>>> make: *** [const_def.o] Error 127
>>>>>>>>>
>>>>>>>>> /home/lnovais/Programs/MESA/const/make
>>>>>>>>> FAILED
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> /home/lnovais/Programs/MESA/const
>>>>>>>>> ./build_and_test FAILED
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> What is still missing?
>>>>>>>>>
>>>>>>>>> Thanks
>>>>>>>>> Liliana
>>>>>>>>>
>>>>>>>>>
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>>>>>>>>> _______________________________________________
>>>>>>>>> mesa-users mailing list
>>>>>>>>> mesa-users at lists.sourceforge.net
>>>>>>>>> https://lists.sourceforge.net/lists/listinfo/mesa-users
>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>
>>>>>
>>>>
>>>
>>
>
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