[mesa-users] mesa install mesa/star fail

Thu Jul 30 09:01:46 EDT 2015

Hi Richard,

Thank you for replying. The links work from the terminal, so which gfortrans gives:
/opt/mesasdk/bin/gfortran

They just don't seem to be recognised from the makefile.

Cheers,
Martyn

On 30 Jul 2015, at 11:44, Richard Townsend <townsend at astro.wisc.edu> wrote:

> If the _link commands weren’t being recognized, then it’s likely that the SDK isn’t installed properly.
> 
> What output do you get from `which gfortran`?
> 
>> On Jul 30, 2015, at 10:04 AM, Martyn Brake <mdb at astro.ex.ac.uk> wrote:
>> 
>> Ok,
>> 
>> Tried from the beginning, all prereq definitely installed.
>> 
>> Had to replace `mesasdk_lapack_link`, mesasdk_blas_link`, `mesasdk_pgplot_link` and `mesasdk_se_link` as they were not being recognised in the make file
>> 
>> # step 3) specify which BLAS and LAPACK libraries to use for mesa/mtx
>> 
>> WHICH_LAPACK =
>> WHICH_BLAS = 
>> LOAD_LAPACK = /opt/mesasdk/lib/liblapack.a /opt/mesasdk/lib/libxblas.a /opt/mesasdk/lib/libblas.a
>> LOAD_BLAS = /opt/mesasdk/lib/libblas.a
>> 
>> 
>> # step 4) do you want to use PGPLOT with mesa/star?                                                      $
>> 
>> USE_PGSTAR = YES
>> LOAD_PGPLOT = -L/opt/mesasdk/lib -lpgplot -lX11
>> 
>> 
>> # step 5) do you want to use SE with mesa/star?   (ask Falk about it)
>> 
>> USE_SE = NO
>> #USE_SE = YES
>> LOAD_SE = -L/opt/mesasdk/lib -lse -L/opt/mesasdk/lib -lhdf5_fortran -lhdf5 -lz
>> INCLUDE_SE = -I${MESASDK_ROOT}/include
>> 
>> Still get the following:
>> gfortran -fno-range-check -fmax-errors=100  -fprotect-parens -fno-sign-zero -fopenmp  -o ../star \
>> 	run_star_extras.o run_star.o  run.o -L../../make -lstar -L../../../lib -lionization -latm -lcolors -lmlt -lnse -lnet -leos -lkap -lrates -lneu -lchem -linterp_2d -linterp_1d -lnum -lf2crlibm -lcrlibm -lmtx -lconst -lutils -lmesaklu /opt/mesasdk/lib/liblapack.a /opt/mesasdk/lib/libxblas.a /opt/mesasdk/lib/libblas.a /opt/mesasdk/lib/libblas.a -L/opt/mesasdk/lib -lpgplot -lX11 -L/opt/mesasdk/lib -lse -L/opt/mesasdk/lib -lhdf5_fortran -lhdf5 -lz 
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateInit2_'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflate'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateEnd'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `crc32'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflate'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateInit_'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateEnd'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateReset'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateReset'
>> collect2: error: ld returned 1 exit status
>> make: *** [star] Error 1
>> 
>> FAILED
>> 
>> 
>> /opt/mesa/star/test
>> FAILED
>> 
>> 
>> Any help would be appreciated.
>> 
>> Kind regards,
>> Martyn
>> 
>> On 29 Jul 2015, at 16:56, Martyn Brake <mdb at astro.ex.ac.uk> wrote:
>> 
>>> Hi Josiah,
>>> 
>>> Many thanks for your help. Double checked the prerequisites reinstalled zlib using following 
>>> 
>>> sudo apt-get install --reinstall zlibc zlib1g zlib1g-dev
>>> 
>>> did a ./clean followed by ./install
>>> 
>>> Still errors at same point. Will double check everything tomorrow.
>>> 
>>> Cheers,
>>> Martyn
>>> On 29 Jul 2015, at 16:32, Josiah W. Schwab <jwschwab at berkeley.edu> wrote:
>>> 
>>>> Looks like you didn't install the prerequisites, notably at least zlib.
>>>> 
>>>> http://www.astro.wisc.edu/~townsend/static.php?ref=mesasdk#Pre-requisites\
>>>> 
>>>> Josiah
>>>> 
>>>> On Wed, Jul 29, 2015 at 8:05 AM, Martyn Brake <mdb at astro.ex.ac.uk> wrote:
>>>> Hello,
>>>> 
>>>> I am trying to get mesa installed. I have the latest versions of mesasdk installed and checked out the latest build from svn.
>>>> 
>>>> I get the following error:
>>>> gfortran -fno-range-check -fmax-errors=100  -fprotect-parens -fno-sign-zero -fopenmp  -o ../star \
>>>>         run_star_extras.o run_star.o  run.o -L../../make -lstar -L../../../lib -lionization -latm -lcolors -lmlt -lnse -lnet -leos -lkap -lrates -lneu -lchem -linterp_2d -linterp_1d -lnum -lf2crlibm -lcrlibm -lmtx -lconst -lutils -lmesaklu /opt/mesasdk/lib/liblapack.a /opt/mesasdk/lib/libxblas.a /opt/mesasdk/lib/libblas.a /opt/mesasdk/lib/libblas.a -L/opt/mesasdk/lib -lpgplot -lX11 -L/opt/mesasdk/lib -lse -L/opt/mesasdk/lib -lhdf5_fortran -lhdf5 -lz
>>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateInit2_'
>>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflate'
>>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateEnd'
>>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `crc32'
>>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflate'
>>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateInit_'
>>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateEnd'
>>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateReset'
>>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateReset'
>>>> collect2: error: ld returned 1 exit status
>>>> make: *** [star] Error 1
>>>> 
>>>> FAILED
>>>> 
>>>> 
>>>> /opt/mesa/star/test
>>>> FAILED
>>>> 
>>>> 
>>>> /opt/mesa/star
>>>> ./build_and_test FAILED
>>>> 
>>>> Could somebody let me know where/why this is failing?
>>>> 
>>>> Thanks,
>>>> Martyn
>>>> 
>>>> 
>>>> ------------------------------------------------------------------------------
>>>> _______________________________________________
>>>> mesa-users mailing list
>>>> mesa-users at lists.sourceforge.net
>>>> https://lists.sourceforge.net/lists/listinfo/mesa-users
>>>> 
>>> 
>>> Martyn Brake 
>>> 
>>> Department of Astrophysics
>>> University of Exeter
>>> 
>>> Email: mdb at astro.ex.ac.uk
>>> Telephone: 01392 725511
>>> 
>>> ------------------------------------------------------------------------------
>>> _______________________________________________
>>> mesa-users mailing list
>>> mesa-users at lists.sourceforge.net
>>> https://lists.sourceforge.net/lists/listinfo/mesa-users
>> 
>> Martyn Brake 
>> 
>> Department of Astrophysics
>> University of Exeter
>> 
>> Email: mdb at astro.ex.ac.uk
>> Telephone: 01392 725511
>> 
>> ------------------------------------------------------------------------------
>> _______________________________________________
>> mesa-users mailing list
>> mesa-users at lists.sourceforge.net
>> https://lists.sourceforge.net/lists/listinfo/mesa-users
> 

Martyn Brake 

Department of Astrophysics
University of Exeter

Email: mdb at astro.ex.ac.uk
Telephone: 01392 725511

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