[mesa-users] mesa install mesa/star fail

[Richard Townsend]

If the _link commands weren’t being recognized, then it’s likely that the SDK isn’t installed properly.

What output do you get from `which gfortran`?

> On Jul 30, 2015, at 10:04 AM, Martyn Brake <mdb at astro.ex.ac.uk> wrote:
> 
> Ok,
> 
> Tried from the beginning, all prereq definitely installed.
> 
> Had to replace `mesasdk_lapack_link`, mesasdk_blas_link`, `mesasdk_pgplot_link` and `mesasdk_se_link` as they were not being recognised in the make file
> 
> # step 3) specify which BLAS and LAPACK libraries to use for mesa/mtx
> 
> WHICH_LAPACK =
> WHICH_BLAS = 
> LOAD_LAPACK = /opt/mesasdk/lib/liblapack.a /opt/mesasdk/lib/libxblas.a /opt/mesasdk/lib/libblas.a
> LOAD_BLAS = /opt/mesasdk/lib/libblas.a
> 
> 
> # step 4) do you want to use PGPLOT with mesa/star?                                                      $
> 
> USE_PGSTAR = YES
> LOAD_PGPLOT = -L/opt/mesasdk/lib -lpgplot -lX11
> 
> 
> # step 5) do you want to use SE with mesa/star?   (ask Falk about it)
> 
> USE_SE = NO
> #USE_SE = YES
> LOAD_SE = -L/opt/mesasdk/lib -lse -L/opt/mesasdk/lib -lhdf5_fortran -lhdf5 -lz
> INCLUDE_SE = -I${MESASDK_ROOT}/include
> 
> Still get the following:
> gfortran -fno-range-check -fmax-errors=100  -fprotect-parens -fno-sign-zero -fopenmp  -o ../star \
> 	run_star_extras.o run_star.o  run.o -L../../make -lstar -L../../../lib -lionization -latm -lcolors -lmlt -lnse -lnet -leos -lkap -lrates -lneu -lchem -linterp_2d -linterp_1d -lnum -lf2crlibm -lcrlibm -lmtx -lconst -lutils -lmesaklu /opt/mesasdk/lib/liblapack.a /opt/mesasdk/lib/libxblas.a /opt/mesasdk/lib/libblas.a /opt/mesasdk/lib/libblas.a -L/opt/mesasdk/lib -lpgplot -lX11 -L/opt/mesasdk/lib -lse -L/opt/mesasdk/lib -lhdf5_fortran -lhdf5 -lz 
> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateInit2_'
> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflate'
> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateEnd'
> /opt/mesasdk/lib/libpgplot.so: undefined reference to `crc32'
> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflate'
> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateInit_'
> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateEnd'
> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateReset'
> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateReset'
> collect2: error: ld returned 1 exit status
> make: *** [star] Error 1
> 
> FAILED
> 
> 
> /opt/mesa/star/test
> FAILED
> 
> 
> Any help would be appreciated.
> 
> Kind regards,
> Martyn
> 
> On 29 Jul 2015, at 16:56, Martyn Brake <mdb at astro.ex.ac.uk <mailto:mdb at astro.ex.ac.uk>> wrote:
> 
>> Hi Josiah,
>> 
>> Many thanks for your help. Double checked the prerequisites reinstalled zlib using following 
>> 
>> sudo apt-get install --reinstall zlibc zlib1g zlib1g-dev
>> 
>> did a ./clean followed by ./install
>> 
>> Still errors at same point. Will double check everything tomorrow.
>> 
>> Cheers,
>> Martyn
>> On 29 Jul 2015, at 16:32, Josiah W. Schwab <jwschwab at berkeley.edu <mailto:jwschwab at berkeley.edu>> wrote:
>> 
>>> Looks like you didn't install the prerequisites, notably at least zlib.
>>> 
>>> http://www.astro.wisc.edu/~townsend/static.php?ref=mesasdk#Pre-requisites\ <http://www.astro.wisc.edu/~townsend/static.php?ref=mesasdk#Pre-requisites\>
>>> 
>>> Josiah
>>> 
>>> On Wed, Jul 29, 2015 at 8:05 AM, Martyn Brake <mdb at astro.ex.ac.uk <mailto:mdb at astro.ex.ac.uk>> wrote:
>>> Hello,
>>> 
>>> I am trying to get mesa installed. I have the latest versions of mesasdk installed and checked out the latest build from svn.
>>> 
>>> I get the following error:
>>> gfortran -fno-range-check -fmax-errors=100  -fprotect-parens -fno-sign-zero -fopenmp  -o ../star \
>>>         run_star_extras.o run_star.o  run.o -L../../make -lstar -L../../../lib -lionization -latm -lcolors -lmlt -lnse -lnet -leos -lkap -lrates -lneu -lchem -linterp_2d -linterp_1d -lnum -lf2crlibm -lcrlibm -lmtx -lconst -lutils -lmesaklu /opt/mesasdk/lib/liblapack.a /opt/mesasdk/lib/libxblas.a /opt/mesasdk/lib/libblas.a /opt/mesasdk/lib/libblas.a -L/opt/mesasdk/lib -lpgplot -lX11 -L/opt/mesasdk/lib -lse -L/opt/mesasdk/lib -lhdf5_fortran -lhdf5 -lz
>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateInit2_'
>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflate'
>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateEnd'
>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `crc32'
>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflate'
>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateInit_'
>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateEnd'
>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateReset'
>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateReset'
>>> collect2: error: ld returned 1 exit status
>>> make: *** [star] Error 1
>>> 
>>> FAILED
>>> 
>>> 
>>> /opt/mesa/star/test
>>> FAILED
>>> 
>>> 
>>> /opt/mesa/star
>>> ./build_and_test FAILED
>>> 
>>> Could somebody let me know where/why this is failing?
>>> 
>>> Thanks,
>>> Martyn
>>> 
>>> 
>>> ------------------------------------------------------------------------------
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>>> mesa-users at lists.sourceforge.net <mailto:mesa-users at lists.sourceforge.net>
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>>> 
>> 
>> Martyn Brake 
>> 
>> Department of Astrophysics
>> University of Exeter
>> 
>> Email: mdb at astro.ex.ac.uk <mailto:mdb at astro.ex.ac.uk>
>> Telephone: 01392 725511
>> 
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>> mesa-users at lists.sourceforge.net <mailto:mesa-users at lists.sourceforge.net>
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> 
> Martyn Brake 
> 
> Department of Astrophysics
> University of Exeter
> 
> Email: mdb at astro.ex.ac.uk <mailto:mdb at astro.ex.ac.uk>
> Telephone: 01392 725511
> 
> ------------------------------------------------------------------------------
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