[mesa-users] mesa install mesa/star fail

[Martyn Brake]

Ok,

Tried from the beginning, all prereq definitely installed.

Had to replace `mesasdk_lapack_link`, mesasdk_blas_link`, `mesasdk_pgplot_link` and `mesasdk_se_link` as they were not being recognised in the make file

# step 3) specify which BLAS and LAPACK libraries to use for mesa/mtx

WHICH_LAPACK =
WHICH_BLAS = 
LOAD_LAPACK = /opt/mesasdk/lib/liblapack.a /opt/mesasdk/lib/libxblas.a /opt/mesasdk/lib/libblas.a
LOAD_BLAS = /opt/mesasdk/lib/libblas.a


# step 4) do you want to use PGPLOT with mesa/star?                                                      $

USE_PGSTAR = YES
LOAD_PGPLOT = -L/opt/mesasdk/lib -lpgplot -lX11


# step 5) do you want to use SE with mesa/star?   (ask Falk about it)

USE_SE = NO
#USE_SE = YES
LOAD_SE = -L/opt/mesasdk/lib -lse -L/opt/mesasdk/lib -lhdf5_fortran -lhdf5 -lz
INCLUDE_SE = -I${MESASDK_ROOT}/include

Still get the following:
gfortran -fno-range-check -fmax-errors=100  -fprotect-parens -fno-sign-zero -fopenmp  -o ../star \
	run_star_extras.o run_star.o  run.o -L../../make -lstar -L../../../lib -lionization -latm -lcolors -lmlt -lnse -lnet -leos -lkap -lrates -lneu -lchem -linterp_2d -linterp_1d -lnum -lf2crlibm -lcrlibm -lmtx -lconst -lutils -lmesaklu /opt/mesasdk/lib/liblapack.a /opt/mesasdk/lib/libxblas.a /opt/mesasdk/lib/libblas.a /opt/mesasdk/lib/libblas.a -L/opt/mesasdk/lib -lpgplot -lX11 -L/opt/mesasdk/lib -lse -L/opt/mesasdk/lib -lhdf5_fortran -lhdf5 -lz 
/opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateInit2_'
/opt/mesasdk/lib/libpgplot.so: undefined reference to `deflate'
/opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateEnd'
/opt/mesasdk/lib/libpgplot.so: undefined reference to `crc32'
/opt/mesasdk/lib/libpgplot.so: undefined reference to `inflate'
/opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateInit_'
/opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateEnd'
/opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateReset'
/opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateReset'
collect2: error: ld returned 1 exit status
make: *** [star] Error 1

FAILED


/opt/mesa/star/test
FAILED


Any help would be appreciated.

Kind regards,
Martyn

On 29 Jul 2015, at 16:56, Martyn Brake <mdb at astro.ex.ac.uk> wrote:

> Hi Josiah,
> 
> Many thanks for your help. Double checked the prerequisites reinstalled zlib using following 
> 
> sudo apt-get install --reinstall zlibc zlib1g zlib1g-dev
> 
> did a ./clean followed by ./install
> 
> Still errors at same point. Will double check everything tomorrow.
> 
> Cheers,
> Martyn
> On 29 Jul 2015, at 16:32, Josiah W. Schwab <jwschwab at berkeley.edu> wrote:
> 
>> Looks like you didn't install the prerequisites, notably at least zlib.
>> 
>> http://www.astro.wisc.edu/~townsend/static.php?ref=mesasdk#Pre-requisites\
>> 
>> Josiah
>> 
>> On Wed, Jul 29, 2015 at 8:05 AM, Martyn Brake <mdb at astro.ex.ac.uk> wrote:
>> Hello,
>> 
>> I am trying to get mesa installed. I have the latest versions of mesasdk installed and checked out the latest build from svn.
>> 
>> I get the following error:
>> gfortran -fno-range-check -fmax-errors=100  -fprotect-parens -fno-sign-zero -fopenmp  -o ../star \
>>         run_star_extras.o run_star.o  run.o -L../../make -lstar -L../../../lib -lionization -latm -lcolors -lmlt -lnse -lnet -leos -lkap -lrates -lneu -lchem -linterp_2d -linterp_1d -lnum -lf2crlibm -lcrlibm -lmtx -lconst -lutils -lmesaklu /opt/mesasdk/lib/liblapack.a /opt/mesasdk/lib/libxblas.a /opt/mesasdk/lib/libblas.a /opt/mesasdk/lib/libblas.a -L/opt/mesasdk/lib -lpgplot -lX11 -L/opt/mesasdk/lib -lse -L/opt/mesasdk/lib -lhdf5_fortran -lhdf5 -lz
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateInit2_'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflate'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateEnd'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `crc32'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflate'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateInit_'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateEnd'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateReset'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateReset'
>> collect2: error: ld returned 1 exit status
>> make: *** [star] Error 1
>> 
>> FAILED
>> 
>> 
>> /opt/mesa/star/test
>> FAILED
>> 
>> 
>> /opt/mesa/star
>> ./build_and_test FAILED
>> 
>> Could somebody let me know where/why this is failing?
>> 
>> Thanks,
>> Martyn
>> 
>> 
>> ------------------------------------------------------------------------------
>> _______________________________________________
>> mesa-users mailing list
>> mesa-users at lists.sourceforge.net
>> https://lists.sourceforge.net/lists/listinfo/mesa-users
>> 
> 
> Martyn Brake 
> 
> Department of Astrophysics
> University of Exeter
> 
> Email: mdb at astro.ex.ac.uk
> Telephone: 01392 725511
> 
> ------------------------------------------------------------------------------
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Martyn Brake 

Department of Astrophysics
University of Exeter

Email: mdb at astro.ex.ac.uk
Telephone: 01392 725511

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