[mesa-users] MESA code Questions!!

[Farag, Ebraheem Khaled]

I've read every inlist you've sent and compared every detail. 
to be specific: I want a plot that will show surface abundances of all the element isotopes i choose. I don't want a default plot because they just don't do that. I've come to the conclusion that the profile_column.list has something to do with making you're own information text in a plot or something of that sort. Please tell me if you are fully understanding my ultimate goal, and if you could possible help out with showing how i can use profile_column.list to create the type of plot I'm looking for. I'm not sure how to put it into my inlist. it's very vague in the directions. I just says a command to type in an inlist with no truth value and has to information as to which or what inlist to put it into.
___
p.s. I've read every topic pertaining to this question in all defaults on the source forge and there are no similar topics I've found o the forum. There is also no explanation at all, as far as I've seen on how to fully utilize the profile_column.list and history_column.list


Thanks,
-Ebraheem

________


_____________________________
From: Willie Strickland [cwskas at gmail.com]
Sent: Friday, July 10, 2015 2:39 PM
To: Farag, Ebraheem Khaled
Cc: mesa-users
Subject: Re: [mesa-users] MESA code Questions!!

The default inlist_pgstar is found at $MESA_DIR/star/defaults/pgstar.defaults

You may make a copy of that in your working directory and change it any way you like.  The one I sent is the basic one that I use and I just add and remove items as necessary.  Unless I am studying someone else’s inlists or one of the test cases.  Then there may be a specific inlist_pgstar for that case.

Did you look at the other inlists I sent?  It is very helpful to look at the various options in other inlists and determine what results you get from the various options.  All of the options are annotated in $MESA_DIR/star/defaults/

Willie


> On Jul 10, 2015, at 8:18 AM, Farag, Ebraheem Khaled <farag.11 at lanl.gov> wrote:
>
> I don't see how you received all that text information about abundances etc. at the bottom of the .png you linked? I looked in your pgstar and just about everything is commented out except plots to show. Does that grid 8 layout just come stock displaying those four columns of information>?
>
> thanks,
> Ebraheem
> From: Willie Strickland [cwskas at gmail.com]
> Sent: Wednesday, July 08, 2015 2:01 PM
> To: Farag, Ebraheem Khaled
> Cc: mesa-users
> Subject: Re: [mesa-users] MESA code Questions!!
>
> I forgot my inlists.  They are attached, as well as history_columns.list & profile_columns.list.
>
> You can add additional abundances to your history.data by added one or more of the following to history_columns.list
>
>    ! the following add all of the isos that are in the current net
>
>    ! add_center_abundances
>    ! add_surface_abundances
>    ! add_average_abundances
>    ! add_log_center_abundances
>    ! add_log_surface_abundances
>    ! add_log_average_abundances
>
> Willie
>
>
>
>
> > On Jul 8, 2015, at 1:49 PM, Willie Strickland <cwskas at gmail.com> wrote:
> >
> > It is recommended to use one of the test_suite cases as a starting point.  For example.
> >
> >        cp -R $MESA_DIR/star/test_suite/solar_calibration ~/documents/mymesa/ags05
> >        cd ~/documents/mymesa/ags05
> >
> > Read the info in ~/documents/mymesa/ags05
> >
> > I normally will run a test case as is, only changing the stopping conditions or other basic control options to make sure that works and I have a basic understanding of what is happening.  Then I begin to make modifications to the inlists, one at a time, and re-run to make sure that works, repeat ….
> >
> > If the solar_calibration option does not fit, take a look at test_suite/1M_pre_ms_to_wd or other test_suite examples  I have not done the solar_calibration except in testing so it may not be what you are looking for.
> >
> > I often will use $MESA_DIR/star/work as a starting point.  It is pretty much bare bones.  Then add to it the other choices you want. I used the approx21.net in this example, that may not be best for you, it is just an example of how to use one of the other nets found in  $MESA_DIR/data/net_data/nets.  The solar_calibration test case uses a different adjustment.
> >
> > After making sure it is working, then make further adjustments to your inlist_project to refine or change your results.
> >
> > For example.
> >
> >        cp -R $MESA_DIR/star/work ~/documents/mymesa/ags05
> >        cd ~/documents/mymesa/ags05
> >
> > Using your preferred editor make the following changes
> >
> > change  &controls
> >
> >      initial_mass = 1 ! in Msun units
> >
> > add to &star_job
> >
> >     set_uniform_initial_composition = .true.
> >
> >     ! uniform initial composition of AGS05 abundances
> >     set_uniform_initial_composition = .true.
> >     initial_h1 = 0.7295
> >     initial_h2 = 0
> >     initial_he3 = 0
> >     initial_he4 = 0.25700
> >     initial_zfracs = 5
> >
> >     change_net = .true.
> >     new_net_name = 'approx21.net'
> >
> >     show_net_species_info = .true.
> >
> > add to &controls
> >
> >     max_age = 4.57d9
> >
> > ./mk
> > ./rn
> >
> >
> > And I get the following results.
> >
> > <grid8_000001.png>
> >
> >
> > Willie
> >
> >> On Jul 8, 2015, at 12:03 PM, Farag, Ebraheem Khaled <farag.11 at lanl.gov> wrote:
> >>
> >> Well I am basically trying to model the sun as well as possible so i can use altered opacity tables to see their affect on the resulting abundances.
> >>
> >>
> >> -I asked previously how to achieve a sun like model, and the response i got gave no information at all...
> >> -In turn i spoke to another student who used the mesa code and he told me to just use the tutorial and modify it with the specific parameters I wanted my "Sun" to fill.
> >