[mesa-users] mesa install mesa/star fail

Thu Aug 6 21:44:57 EDT 2015

NVM, I see the follow up email where you installed that. Have you resourced
(shutdown, logged out) your shell path file? It seems simple but has
tripped me up in the past.

Is this OSX or linux?

On Thu, Aug 6, 2015 at 8:42 PM, Amber Lauer <alauer1 at tigers.lsu.edu> wrote:

> Isn't the zlib-dev also required? I seem to recall that it is.
>
> On Thu, Jul 30, 2015 at 8:01 AM, Martyn Brake <mdb at astro.ex.ac.uk> wrote:
>
>> Hi Richard,
>>
>> Thank you for replying. The links work from the terminal, so which
>> gfortrans gives:
>> /opt/mesasdk/bin/gfortran
>>
>> They just don't seem to be recognised from the makefile.
>>
>> Cheers,
>> Martyn
>>
>> On 30 Jul 2015, at 11:44, Richard Townsend <townsend at astro.wisc.edu>
>> wrote:
>>
>> If the _link commands weren’t being recognized, then it’s likely that the
>> SDK isn’t installed properly.
>>
>> What output do you get from `which gfortran`?
>>
>> On Jul 30, 2015, at 10:04 AM, Martyn Brake <mdb at astro.ex.ac.uk> wrote:
>>
>> Ok,
>>
>> Tried from the beginning, all prereq definitely installed.
>>
>> Had to replace `mesasdk_lapack_link`, mesasdk_blas_link`,
>> `mesasdk_pgplot_link` and `mesasdk_se_link` as they were not being
>> recognised in the make file
>>
>> # step 3) specify which BLAS and LAPACK libraries to use for mesa/mtx
>>
>> WHICH_LAPACK =
>> WHICH_BLAS =
>> LOAD_LAPACK = /opt/mesasdk/lib/liblapack.a /opt/mesasdk/lib/libxblas.a
>> /opt/mesasdk/lib/libblas.a
>> LOAD_BLAS = /opt/mesasdk/lib/libblas.a
>>
>>
>> # step 4) do you want to use PGPLOT with mesa/star?
>>                                $
>>
>> USE_PGSTAR = YES
>> LOAD_PGPLOT = -L/opt/mesasdk/lib -lpgplot -lX11
>>
>>
>> # step 5) do you want to use SE with mesa/star?   (ask Falk about it)
>>
>> USE_SE = NO
>> #USE_SE = YES
>> LOAD_SE = -L/opt/mesasdk/lib -lse -L/opt/mesasdk/lib -lhdf5_fortran
>> -lhdf5 -lz
>> INCLUDE_SE = -I${MESASDK_ROOT}/include
>>
>> Still get the following:
>> gfortran -fno-range-check -fmax-errors=100  -fprotect-parens
>> -fno-sign-zero -fopenmp  -o ../star \
>> run_star_extras.o run_star.o  run.o -L../../make -lstar -L../../../lib
>> -lionization -latm -lcolors -lmlt -lnse -lnet -leos -lkap -lrates -lneu
>> -lchem -linterp_2d -linterp_1d -lnum -lf2crlibm -lcrlibm -lmtx -lconst
>> -lutils -lmesaklu /opt/mesasdk/lib/liblapack.a /opt/mesasdk/lib/libxblas.a
>> /opt/mesasdk/lib/libblas.a /opt/mesasdk/lib/libblas.a -L/opt/mesasdk/lib
>> -lpgplot -lX11 -L/opt/mesasdk/lib -lse -L/opt/mesasdk/lib -lhdf5_fortran
>> -lhdf5 -lz
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateInit2_'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflate'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateEnd'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `crc32'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflate'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateInit_'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateEnd'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateReset'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateReset'
>> collect2: error: ld returned 1 exit status
>> make: *** [star] Error 1
>>
>> FAILED
>>
>>
>> /opt/mesa/star/test
>> FAILED
>>
>>
>> Any help would be appreciated.
>>
>> Kind regards,
>> Martyn
>>
>> On 29 Jul 2015, at 16:56, Martyn Brake <mdb at astro.ex.ac.uk> wrote:
>>
>> Hi Josiah,
>>
>> Many thanks for your help. Double checked the prerequisites reinstalled
>> zlib using following
>>
>> sudo apt-get install --reinstall zlibc zlib1g zlib1g-dev
>>
>> did a ./clean followed by ./install
>>
>> Still errors at same point. Will double check everything tomorrow.
>>
>> Cheers,
>> Martyn
>> On 29 Jul 2015, at 16:32, Josiah W. Schwab <jwschwab at berkeley.edu> wrote:
>>
>> Looks like you didn't install the prerequisites, notably at least zlib.
>>
>> http://www.astro.wisc.edu/~townsend/static.php?ref=mesasdk#Pre-requisites\
>>
>> Josiah
>>
>> On Wed, Jul 29, 2015 at 8:05 AM, Martyn Brake <mdb at astro.ex.ac.uk> wrote:
>>
>>> Hello,
>>>
>>> I am trying to get mesa installed. I have the latest versions of mesasdk
>>> installed and checked out the latest build from svn.
>>>
>>> I get the following error:
>>> gfortran -fno-range-check -fmax-errors=100  -fprotect-parens
>>> -fno-sign-zero -fopenmp  -o ../star \
>>>         run_star_extras.o run_star.o  run.o -L../../make -lstar
>>> -L../../../lib -lionization -latm -lcolors -lmlt -lnse -lnet -leos -lkap
>>> -lrates -lneu -lchem -linterp_2d -linterp_1d -lnum -lf2crlibm -lcrlibm
>>> -lmtx -lconst -lutils -lmesaklu /opt/mesasdk/lib/liblapack.a
>>> /opt/mesasdk/lib/libxblas.a /opt/mesasdk/lib/libblas.a
>>> /opt/mesasdk/lib/libblas.a -L/opt/mesasdk/lib -lpgplot -lX11
>>> -L/opt/mesasdk/lib -lse -L/opt/mesasdk/lib -lhdf5_fortran -lhdf5 -lz
>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateInit2_'
>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflate'
>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateEnd'
>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `crc32'
>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflate'
>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateInit_'
>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateEnd'
>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateReset'
>>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateReset'
>>> collect2: error: ld returned 1 exit status
>>> make: *** [star] Error 1
>>>
>>> FAILED
>>>
>>>
>>> /opt/mesa/star/test
>>> FAILED
>>>
>>>
>>> /opt/mesa/star
>>> ./build_and_test FAILED
>>>
>>> Could somebody let me know where/why this is failing?
>>>
>>> Thanks,
>>> Martyn
>>>
>>>
>>>
>>> ------------------------------------------------------------------------------
>>> _______________________________________________
>>> mesa-users mailing list
>>> mesa-users at lists.sourceforge.net
>>> https://lists.sourceforge.net/lists/listinfo/mesa-users
>>>
>>
>>
>> Martyn Brake
>>
>> Department of Astrophysics
>> University of Exeter
>>
>> Email: mdb at astro.ex.ac.uk
>> Telephone: 01392 725511
>>
>>
>> ------------------------------------------------------------------------------
>> _______________________________________________
>> mesa-users mailing list
>> mesa-users at lists.sourceforge.net
>> https://lists.sourceforge.net/lists/listinfo/mesa-users
>>
>>
>> Martyn Brake
>>
>> Department of Astrophysics
>> University of Exeter
>>
>> Email: mdb at astro.ex.ac.uk
>> Telephone: 01392 725511
>>
>>
>> ------------------------------------------------------------------------------
>> _______________________________________________
>> mesa-users mailing list
>> mesa-users at lists.sourceforge.net
>> https://lists.sourceforge.net/lists/listinfo/mesa-users
>>
>>
>>
>> Martyn Brake
>>
>> Department of Astrophysics
>> University of Exeter
>>
>> Email: mdb at astro.ex.ac.uk
>> Telephone: 01392 725511
>>
>>
>>
>> ------------------------------------------------------------------------------
>>
>> _______________________________________________
>> mesa-users mailing list
>> mesa-users at lists.sourceforge.net
>> https://lists.sourceforge.net/lists/listinfo/mesa-users
>>
>>
>
>
> --
> Amber Lauer. M.S. Physics
> PhD Candidate,
> Dept. of Physics & Astronomy,
> Louisiana State University
>

-- 
Amber Lauer. M.S. Physics
PhD Candidate,
Dept. of Physics & Astronomy,
Louisiana State University
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