[mesa-users] mesa install mesa/star fail

[Amber Lauer]

Isn't the zlib-dev also required? I seem to recall that it is.

On Thu, Jul 30, 2015 at 8:01 AM, Martyn Brake <mdb at astro.ex.ac.uk> wrote:

> Hi Richard,
>
> Thank you for replying. The links work from the terminal, so which
> gfortrans gives:
> /opt/mesasdk/bin/gfortran
>
> They just don't seem to be recognised from the makefile.
>
> Cheers,
> Martyn
>
> On 30 Jul 2015, at 11:44, Richard Townsend <townsend at astro.wisc.edu>
> wrote:
>
> If the _link commands weren’t being recognized, then it’s likely that the
> SDK isn’t installed properly.
>
> What output do you get from `which gfortran`?
>
> On Jul 30, 2015, at 10:04 AM, Martyn Brake <mdb at astro.ex.ac.uk> wrote:
>
> Ok,
>
> Tried from the beginning, all prereq definitely installed.
>
> Had to replace `mesasdk_lapack_link`, mesasdk_blas_link`,
> `mesasdk_pgplot_link` and `mesasdk_se_link` as they were not being
> recognised in the make file
>
> # step 3) specify which BLAS and LAPACK libraries to use for mesa/mtx
>
> WHICH_LAPACK =
> WHICH_BLAS =
> LOAD_LAPACK = /opt/mesasdk/lib/liblapack.a /opt/mesasdk/lib/libxblas.a
> /opt/mesasdk/lib/libblas.a
> LOAD_BLAS = /opt/mesasdk/lib/libblas.a
>
>
> # step 4) do you want to use PGPLOT with mesa/star?
>                                $
>
> USE_PGSTAR = YES
> LOAD_PGPLOT = -L/opt/mesasdk/lib -lpgplot -lX11
>
>
> # step 5) do you want to use SE with mesa/star?   (ask Falk about it)
>
> USE_SE = NO
> #USE_SE = YES
> LOAD_SE = -L/opt/mesasdk/lib -lse -L/opt/mesasdk/lib -lhdf5_fortran -lhdf5
> -lz
> INCLUDE_SE = -I${MESASDK_ROOT}/include
>
> Still get the following:
> gfortran -fno-range-check -fmax-errors=100  -fprotect-parens
> -fno-sign-zero -fopenmp  -o ../star \
> run_star_extras.o run_star.o  run.o -L../../make -lstar -L../../../lib
> -lionization -latm -lcolors -lmlt -lnse -lnet -leos -lkap -lrates -lneu
> -lchem -linterp_2d -linterp_1d -lnum -lf2crlibm -lcrlibm -lmtx -lconst
> -lutils -lmesaklu /opt/mesasdk/lib/liblapack.a /opt/mesasdk/lib/libxblas.a
> /opt/mesasdk/lib/libblas.a /opt/mesasdk/lib/libblas.a -L/opt/mesasdk/lib
> -lpgplot -lX11 -L/opt/mesasdk/lib -lse -L/opt/mesasdk/lib -lhdf5_fortran
> -lhdf5 -lz
> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateInit2_'
> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflate'
> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateEnd'
> /opt/mesasdk/lib/libpgplot.so: undefined reference to `crc32'
> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflate'
> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateInit_'
> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateEnd'
> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateReset'
> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateReset'
> collect2: error: ld returned 1 exit status
> make: *** [star] Error 1
>
> FAILED
>
>
> /opt/mesa/star/test
> FAILED
>
>
> Any help would be appreciated.
>
> Kind regards,
> Martyn
>
> On 29 Jul 2015, at 16:56, Martyn Brake <mdb at astro.ex.ac.uk> wrote:
>
> Hi Josiah,
>
> Many thanks for your help. Double checked the prerequisites reinstalled
> zlib using following
>
> sudo apt-get install --reinstall zlibc zlib1g zlib1g-dev
>
> did a ./clean followed by ./install
>
> Still errors at same point. Will double check everything tomorrow.
>
> Cheers,
> Martyn
> On 29 Jul 2015, at 16:32, Josiah W. Schwab <jwschwab at berkeley.edu> wrote:
>
> Looks like you didn't install the prerequisites, notably at least zlib.
>
> http://www.astro.wisc.edu/~townsend/static.php?ref=mesasdk#Pre-requisites\
>
> Josiah
>
> On Wed, Jul 29, 2015 at 8:05 AM, Martyn Brake <mdb at astro.ex.ac.uk> wrote:
>
>> Hello,
>>
>> I am trying to get mesa installed. I have the latest versions of mesasdk
>> installed and checked out the latest build from svn.
>>
>> I get the following error:
>> gfortran -fno-range-check -fmax-errors=100  -fprotect-parens
>> -fno-sign-zero -fopenmp  -o ../star \
>>         run_star_extras.o run_star.o  run.o -L../../make -lstar
>> -L../../../lib -lionization -latm -lcolors -lmlt -lnse -lnet -leos -lkap
>> -lrates -lneu -lchem -linterp_2d -linterp_1d -lnum -lf2crlibm -lcrlibm
>> -lmtx -lconst -lutils -lmesaklu /opt/mesasdk/lib/liblapack.a
>> /opt/mesasdk/lib/libxblas.a /opt/mesasdk/lib/libblas.a
>> /opt/mesasdk/lib/libblas.a -L/opt/mesasdk/lib -lpgplot -lX11
>> -L/opt/mesasdk/lib -lse -L/opt/mesasdk/lib -lhdf5_fortran -lhdf5 -lz
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateInit2_'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflate'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateEnd'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `crc32'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflate'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateInit_'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateEnd'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `inflateReset'
>> /opt/mesasdk/lib/libpgplot.so: undefined reference to `deflateReset'
>> collect2: error: ld returned 1 exit status
>> make: *** [star] Error 1
>>
>> FAILED
>>
>>
>> /opt/mesa/star/test
>> FAILED
>>
>>
>> /opt/mesa/star
>> ./build_and_test FAILED
>>
>> Could somebody let me know where/why this is failing?
>>
>> Thanks,
>> Martyn
>>
>>
>>
>> ------------------------------------------------------------------------------
>> _______________________________________________
>> mesa-users mailing list
>> mesa-users at lists.sourceforge.net
>> https://lists.sourceforge.net/lists/listinfo/mesa-users
>>
>
>
> Martyn Brake
>
> Department of Astrophysics
> University of Exeter
>
> Email: mdb at astro.ex.ac.uk
> Telephone: 01392 725511
>
>
> ------------------------------------------------------------------------------
> _______________________________________________
> mesa-users mailing list
> mesa-users at lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/mesa-users
>
>
> Martyn Brake
>
> Department of Astrophysics
> University of Exeter
>
> Email: mdb at astro.ex.ac.uk
> Telephone: 01392 725511
>
>
> ------------------------------------------------------------------------------
> _______________________________________________
> mesa-users mailing list
> mesa-users at lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/mesa-users
>
>
>
> Martyn Brake
>
> Department of Astrophysics
> University of Exeter
>
> Email: mdb at astro.ex.ac.uk
> Telephone: 01392 725511
>
>
>
> ------------------------------------------------------------------------------
>
> _______________________________________________
> mesa-users mailing list
> mesa-users at lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/mesa-users
>
>


-- 
Amber Lauer. M.S. Physics
PhD Candidate,
Dept. of Physics & Astronomy,
Louisiana State University
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://lists.mesastar.org/pipermail/mesa-users/attachments/20150806/01ce71f1/attachment.html>