[mesa-users] Can't install MESA (mtx package)

Nikhil Mahajan nikhil.mahajan at utoronto.ca
Sat Aug 2 03:55:36 EDT 2014


Hi,

I am trying to install *MESA (release 6208)* using *MESASDK (version
20140313)*, and get the following error during installation:

make: Nothing to be done for `all'.
gfortran -fno-range-check -fmax-errors=100  -fprotect-parens -fno-sign-zero
-fopenmp -I../../make -I../../public -I../../../include
-I/mnt/raid-cita/mahajann/MESA6208/mesasdk/include -fbounds-check
-Wuninitialized -Warray-bounds -g -c -ffree-form -x f95-cpp-input
../src/test_mtx_support.f
gfortran -fno-range-check -fmax-errors=100  -fprotect-parens -fno-sign-zero
-fopenmp -I../../make -I../../public -I../../../include
-I/mnt/raid-cita/mahajann/MESA6208/mesasdk/include -fbounds-check
-Wuninitialized -Warray-bounds -g -c -ffree-form -x f95-cpp-input -x
f95-cpp-input -DDBLE -o test_block_tri_dble.o
../src/test_block_tridiagonal.f
gfortran -fno-range-check -fmax-errors=100  -fprotect-parens -fno-sign-zero
-fopenmp -I../../make -I../../public -I../../../include
-I/mnt/raid-cita/mahajann/MESA6208/mesasdk/include -fbounds-check
-Wuninitialized -Warray-bounds -g -c -ffree-form -x f95-cpp-input -x
f95-cpp-input -DDBLE -o test_klu_dble.o ../src/test_klu.f
gfortran -fno-range-check -fmax-errors=100  -fprotect-parens -fno-sign-zero
-fopenmp -I../../make -I../../public -I../../../include
-I/mnt/raid-cita/mahajann/MESA6208/mesasdk/include -fbounds-check
-Wuninitialized -Warray-bounds -g -c -ffree-form -x f95-cpp-input
../src/test_sparse.f
gfortran -fno-range-check -fmax-errors=100  -fprotect-parens -fno-sign-zero
-fopenmp -I../../make -I../../public -I../../../include
-I/mnt/raid-cita/mahajann/MESA6208/mesasdk/include -fbounds-check
-Wuninitialized -Warray-bounds -g -c -ffree-form -x f95-cpp-input
../src/test_mtx.f
gfortran -fopenmp -o ../tester test_mtx_support.o test_block_tri_dble.o
test_klu_dble.o test_sparse.o test_mtx.o  -L../../make -lf2crlibm -lcrlibm
-lmtx -lconst -lutils -lmesaklu `mesasdk_lapack_link` `mesasdk_blas_link`
-L../../../lib
../../make/libmtx.a(mtx_support.o): In function
`__mtx_support_MOD_do_quad_block_multiply_xa':
mtx_support.f:(.text+0x2319): undefined reference to `GOMP_parallel'
../../make/libmtx.a(mtx_support.o): In function
`__mtx_support_MOD_do_block_multiply_xa':
mtx_support.f:(.text+0x2379): undefined reference to `GOMP_parallel'
../../make/libmtx.a(mtx_support.o): In function
`__mtx_support_MOD_do_lu_factored_block_dble_mv':
mtx_support.f:(.text+0x415f): undefined reference to `GOMP_parallel'
../../make/libmtx.a(mtx_support.o): In function
`__mtx_support_MOD_do_block_mv_quad':
mtx_support.f:(.text+0x41f5): undefined reference to `GOMP_parallel'
../../make/libmtx.a(mtx_support.o): In function
`__mtx_support_MOD_do_band_to_row_sparse':
mtx_support.f:(.text+0x756a): undefined reference to `GOMP_parallel'
../../make/libmtx.a(bcyclic.o):bcyclic.f:(.text+0x2cde): more undefined
references to `GOMP_parallel' follow
collect2: error: ld returned 1 exit status
make: *** [tester] Error 1

/mnt/raid-cita/mahajann/MESA6208/mesa/mtx/test
FAILED


/mnt/raid-cita/mahajann/MESA6208/mesa/mtx
./build_and_test FAILED

----
Here's some extra information:

*[mahajann at tpb4 mesa]$ uname -a*
Linux tpb4 2.6.32-279.2.1.el6.x86_64 #1 SMP Fri Jul 20 01:55:29 UTC 2012
x86_64 x86_64 x86_64 GNU/Linux
*[mahajann at tpb4 mesa]$ gfortran -v*
Using built-in specs.
COLLECT_GCC=/mnt/raid-cita/mahajann/MESA6208/mesasdk/bin/gfortran.exec
COLLECT_LTO_WRAPPER=/mnt/raid-cita/mahajann/MESA6208/mesasdk/bin/../libexec/gcc/x86_64-pc-linux-gnu/4.9.0/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: ./configure CC=gcc --build=x86_64-pc-linux-gnu
--prefix=/root/mesasdk --with-gmp=/root/mesasdk --with-mpfr=/root/mesasdk
--with-mpc=/root/mesasdk --enable-languages=c,c++,fortran
--disable-multilib --disable-nls --disable-libsanitizer
Thread model: posix
gcc version 4.9.0 20140201 (experimental) (GCC)
*[mahajann at tpb4 mesa]$ echo $MESASDK_ROOT*
/mnt/raid-cita/mahajann/MESA6208/mesasdk
*[mahajann at tpb4 mesa]$ echo $PATH*
/mnt/raid-cita/mahajann/MESA6208/mesasdk/bin:/opt/python/2.7.6/bin:/opt/gcc/4.8.2/bin/:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/opt/c3-4/:/opt/maui-3.3.1/bin:/opt/torque-2.5.12/bin:/opt/torque-2.5.12/sbin:/opt/pegasus/3.1/bin:/opt/dell/srvadmin/bin:/opt/openmpi/1.6.5-gcc-4.8.2/bin

----

What can I do to fix this issue? Please advise.

Thanks!

Regards,
Nikhil Mahajan
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