[mesa-users] Problems with TIOGA

Matt Coleman mcoleman at physics.ucsb.edu
Fri Jan 27 15:06:57 EST 2012


Hi Maurizio, Bill, and Mesa users,

Was the tioga problem of producing reasonable terminal output but no plots
ever fixed? I believe I have the exact same problem.

Thanks,

On Wed, Jan 25, 2012 at 10:45 AM, Giannotti, Maurizio <
MGiannotti at mail.barry.edu> wrote:

>  Hello Bill,****
>
> ** **
>
> Thanks for your prompt response.****
>
> ** **
>
> I did as you said. I copied your files (log42.data and profiles.index) in
> my LOGS folder, and I ran the command. This is the output that I get:****
>
> ** **
>
> mesa2 at mesa2:~/Desktop/projects/multi_work/star_profile$ tioga by_mass -m 0
> ****
>
> loading /home/mesa2/Desktop/projects/multi_work/star_profile/by_mass.rb***
> *
>
> log_mass_frac_ymin -6****
>
> write FYI track info****
>
> xs.length 1040****
>
> xs[0] 2.98962080547118****
>
> xs[-1] 1.17545985800201e-07****
>
> @xmin ****
>
> @xmax ****
>
> @grid_min 0****
>
> @grid_max -1****
>
> xs[@grid_min] 2.98962080547118****
>
> xs[@grid_max] 1.17545985800201e-07****
>
> show_by @xaxis_by mass name abundances****
>
> no frills false****
>
> eval_str  =   abundances(xs, xlabel)****
>
>   0
> /home/mesa2/Desktop/projects/multi_work/star_profile/profiles_out/Abundances.pdf
> ****
>
> mesa2 at mesa2:~/Desktop/projects/multi_work/star_profile$ ****
>
> ** **
>
> The output is very similar to what you get, except for the line ****
>
>  Abundances_figure.pdf****
>
> ** **
>
> just after eval_str  =   abundances(xs, xlabel)****
>
> ** **
>
> However, the folder profile_out is empty. If I try to see the output file
> that is what I get:****
>
> ** **
>
>
> home/mesa2/Desktop/projects/multi_work/star_profile/profiles_out/Abundances.pdf
> ****
>
> bash:
> home/mesa2/Desktop/projects/multi_work/star_profile/profiles_out/Abundances.pdf:
> No such file or directory****
>
> ** **
>
> ** **
>
> Notice that I have UBUNTU and not the latest version of MESA (I still have
> the version installed around last September). ****
>
> ** **
>
> I am pretty confused about what is going on. Do you think I should try to
> install the latest version of MESA, reinstall TIOGA, and try again?****
>
> ** **
>
> Thank you very much for you help.****
>
> ** **
>
> Maurizio****
>
> ** **
>
> ** **
>
> ** **
>
> *From:* Bill Paxton [mailto:paxton at kitp.ucsb.edu]
> *Sent:* Tuesday, January 24, 2012 10:16 PM
> *To:* Giannotti, Maurizio
> *Cc:* mesa-users at lists.sourceforge.net
> *Subject:* Re: [mesa-users] Problems with TIOGA****
>
> ** **
>
> Hi Maurizio, ****
>
> ** **
>
> I just checked on my machine.  I did a run in the work directory so that
> there were files in LOGS.****
>
> Then I did cd star_profile and ran tioga using the same command you did.**
> **
>
> I got the following terminal output and also found the following new file
> in profiles_out.****
>
> ** **
>
> /Users/bpaxton/mesa/star/work/star_profile: tioga by_mass -m 0****
>
> loading /Users/bpaxton/mesa/star/work/star_profile/by_mass.rb****
>
> log_mass_frac_ymin -6****
>
> xs.length 1040****
>
> xs[0] 2.98962080547118****
>
> xs[-1] 1.17545985800201e-07****
>
> @xmin ****
>
> @xmax ****
>
> @grid_min 0****
>
> @grid_max -1****
>
> xs[@grid_min] 2.98962080547118****
>
> xs[@grid_max] 1.17545985800201e-07****
>
> show_by @xaxis_by mass name abundances****
>
> no frills false****
>
> eval_str  =   abundances(xs, xlabel)****
>
>  Abundances_figure.pdf****
>
>   0  /Users/bpaxton/mesa/star/work/star_profile/profiles_out/Abundances.pdf
> ****
>
> ** **
>
> ** **
>
> Do you get similar terminal output to this?****
>
> ** **
>
> Try putting these files in your work/LOGS.  Then you'll have the same data
> for plotting as I do.****
>
> ** **
>
> You should then get the same pdf output.  Do you get anything?****
>
> ** **
>
> -Bill****
>
> ** **
>
> ** **
>
> ** **
>
> ** **
>
> On Jan 24, 2012, at 6:14 PM, Giannotti, Maurizio wrote:****
>
>
>
> ****
>
> I have been using MESA for a while, and lately I have tried to install
> Tioga. Everything seems to go well. I can run the examples in the tioga
> folder, see the pdf of the Tioga icon, and also the blue and the red
> figures. However, when I try to make a plot from the Mesa/work folder,
> Tioga does not produce any output. For example, if I go in the star_profile
> folder and run
>
> tioga by_mass -m 0****
>
>
> it does make the folder profiles_out, and I get a message that indicates
> the production of the file Abundances.pdf. However the file is not there.
> No error message. I have had this problem for several weeks, and no matter
> what I do, I cannot produce the pdf files. ****
>
> ** **
>
>
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-- 
- Matt
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