[mesa-users] Fwd: installation error in 4219
Alexey Zinger
zinger.alexey at gmail.com
Fri Aug 3 20:45:31 EDT 2012
Hey Ming,
I've just had the same exact problem trying to install mesa on 64-bit
machine, accidentally using 32-bit mesaSDK.
So check if you are using the right-bit SDK.
Hope that helps.
> write ../../data/rates_data/cache/rfe54ng_aux_1.bin
> write ../../data/rates_data/cache/rfe55ng_aux_1.bin
> write ../../data/rates_data/cache/rfe55gn_aux_1.bin
> write ../../data/rates_data/cache/rfe56gn_aux_1.bin
> write ../../data/rates_data/cache/rfe54ng_to_fe56_1.bin
> write ../../data/rates_data/cache/rfe56gn_to_fe54_1.bin
> write ../../data/rates_data/cache/rni56ec_to_fe56_1.bin
> write ../../data/rates_data/cache/rn14gc12_1.bin
>
> second file is short
> 154c154
> < eval_net failed
> --- field 2
> 155c155
> < xh 1.6407719997447977D-23
> --- field 1
>> using seulex
> 156c156
> < Y 3.5121292873649412D-04
> --- field 1
>> rtol 1.0000000000000000D-10
> 157c157
> < Z 9.9964878707126348D-01
> --- field 1
>> atol 1.0000000000000000D-10
> 158c158
> < abar 1.9648304772001826D+01
> --- field 2
> 159c159
> < zbar 1.0033778909757482D+01
> --- field 4
>> at time (sec) 1.0000000000000000D+06
> 160c160
> < pressure 4.9999999999999994D+24
> --- field 4
>> at time (yr) 3.1687535565519544D-02
> 161c161
> < Prad 3.6020881581384553D+23
> --- field 3
>> pressure 5.0000000000000005D+24 2.4698970004336019D+01
> 162c162
> < Pgas 4.6397911841861536D+24
> --- field 3
>> starting_temp 2.2387230720000000D+09 9.3500003750705361D+00
> 163c163
> < lgPgas 2.4666498435383250D+01
> --- field 3
>> ending_temp 4.6153240082167854D+09 9.6642021950783423D+00
> 164c164
> < T 3.4570499294758329D+09
> --- field 3
>> starting_density 2.8760315861284837D+07 7.4587936513930346D+00
> 165c165
> < logT 9.5387056520154321D+00
> --- field 3
>> ending_density 1.5795400836913221D+07 7.1985306513903113D+00
> 166c166
> < Rho 2.3040566163397789D+07
> --- field 4
>> si28 0.0000000000000000D+00 7.7233969171112293D-01 7.7233969171112
> 293D-01
> 167c167
> < logRho 7.3624931465662149D+00
> --- field 4
>> s32 0.0000000000000000D+00 2.0983369420352885D-01 2.0983369420352
> 885D-01
> 168c168
> < Cp 1.9544032354890653D+08
> --- field 4
>> ar36 0.0000000000000000D+00 1.1936217631597641D-02 1.1936217631597
> 641D-02
> 169c169
> < eval_net failed
> --- field 2
> 170c170
> < xh 2.6363863879850297D-24
> --- field 1
>> Do_One_Test_Burn_Const_P approx20.net
> 171c171
> < Y 5.6309039762584647D-29
> --- field 2
> 172c172
> < Z 1.0000000000000000D+00
> --- field 2
> 173c173
> < abar 7.8506252422847265D+00
> --- field 2
> /home/deep/opt/mesa/net/test
> TEST FAILED -- compare test_output to tmp.txt
>
>
> /home/deep/opt/mesa/net
> ./build_and_test FAILED
Alexey
On 7/29/2012 12:01, Richard Townsend wrote:
> This got sent to the wrong list, so I'm reposting...
>
> Begin forwarded message:
>
>> From: Richard Townsend <townsend at astro.wisc.edu>
>> Subject: Re: Re: Re: [mesa-users] installation error in 4219
>> Date: July 29, 2012 11:10:55 AM CDT
>> To: "Ming Yang" <myang at mail.bnu.edu.cn>
>> Cc: "<mesa-council at lists.sourceforge.net>" <mesa-council at lists.sourceforge.net>
>>
>> Very interesting! It seems that the 'ulimit -s unlimited' succeeded --- the error you are now getting is not the same as the previous error, and others on the MESA list (which I'm adding back in to the CC list) may have some suggestions on fixing the new error.
>>
>> The original error illustrates that on some systems (in this case, 32-bit Linux) the stack gets exhausted by array allocations. This in itself is a little puzzling because I thought all allocatable arrays went on the heap rather than the stack.
>>
>> cheers,
>>
>> Rich
>>
>> On Jul 29, 2012, at 10:25 AM, Ming Yang wrote:
>>
>>> Dear Richard:
>>> Well, as you say, before the "./install", I have run the 'ulimit -s unlimited'. This time it comes another error...long log...
>>>
>>>
>>>
>>> write ../../data/rates_data/cache/rfe54ng_aux_1.bin
>>> write ../../data/rates_data/cache/rfe55ng_aux_1.bin
>>> write ../../data/rates_data/cache/rfe55gn_aux_1.bin
>>> write ../../data/rates_data/cache/rfe56gn_aux_1.bin
>>> write ../../data/rates_data/cache/rfe54ng_to_fe56_1.bin
>>> write ../../data/rates_data/cache/rfe56gn_to_fe54_1.bin
>>> write ../../data/rates_data/cache/rni56ec_to_fe56_1.bin
>>> write ../../data/rates_data/cache/rn14gc12_1.bin
>>>
>>> second file is short
>>> 154c154
>>> < eval_net failed
>>> --- field 2
>>> 155c155
>>> < xh 1.6407719997447977D-23
>>> --- field 1
>>>> using seulex
>>> 156c156
>>> < Y 3.5121292873649412D-04
>>> --- field 1
>>>> rtol 1.0000000000000000D-10
>>> 157c157
>>> < Z 9.9964878707126348D-01
>>> --- field 1
>>>> atol 1.0000000000000000D-10
>>> 158c158
>>> < abar 1.9648304772001826D+01
>>> --- field 2
>>> 159c159
>>> < zbar 1.0033778909757482D+01
>>> --- field 4
>>>> at time (sec) 1.0000000000000000D+06
>>> 160c160
>>> < pressure 4.9999999999999994D+24
>>> --- field 4
>>>> at time (yr) 3.1687535565519544D-02
>>> 161c161
>>> < Prad 3.6020881581384553D+23
>>> --- field 3
>>>> pressure 5.0000000000000005D+24 2.4698970004336019D+01
>>> 162c162
>>> < Pgas 4.6397911841861536D+24
>>> --- field 3
>>>> starting_temp 2.2387230720000000D+09 9.3500003750705361D+00
>>> 163c163
>>> < lgPgas 2.4666498435383250D+01
>>> --- field 3
>>>> ending_temp 4.6153240082167854D+09 9.6642021950783423D+00
>>> 164c164
>>> < T 3.4570499294758329D+09
>>> --- field 3
>>>> starting_density 2.8760315861284837D+07 7.4587936513930346D+00
>>> 165c165
>>> < logT 9.5387056520154321D+00
>>> --- field 3
>>>> ending_density 1.5795400836913221D+07 7.1985306513903113D+00
>>> 166c166
>>> < Rho 2.3040566163397789D+07
>>> --- field 4
>>>> si28 0.0000000000000000D+00 7.7233969171112293D-01 7.7233969171112
>>> 293D-01
>>> 167c167
>>> < logRho 7.3624931465662149D+00
>>> --- field 4
>>>> s32 0.0000000000000000D+00 2.0983369420352885D-01 2.0983369420352
>>> 885D-01
>>> 168c168
>>> < Cp 1.9544032354890653D+08
>>> --- field 4
>>>> ar36 0.0000000000000000D+00 1.1936217631597641D-02 1.1936217631597
>>> 641D-02
>>> 169c169
>>> < eval_net failed
>>> --- field 2
>>> 170c170
>>> < xh 2.6363863879850297D-24
>>> --- field 1
>>>> Do_One_Test_Burn_Const_P approx20.net
>>> 171c171
>>> < Y 5.6309039762584647D-29
>>> --- field 2
>>> 172c172
>>> < Z 1.0000000000000000D+00
>>> --- field 2
>>> 173c173
>>> < abar 7.8506252422847265D+00
>>> --- field 2
>>> /home/deep/opt/mesa/net/test
>>> TEST FAILED -- compare test_output to tmp.txt
>>>
>>>
>>> /home/deep/opt/mesa/net
>>> ./build_and_test FAILED
>>>
>>>
>>>
>>> --
>>> --------------------------------------------
>>> Ming Yang
>>> Department of Astronomy
>>> Beijing Normal University
>>> 19 Xinjiekou Wai Street
>>> Beijing, 100875
>>> P.R.China
>>> E-mail: myang at mail.bnu.edu.cn
>>> --------------------------------------------
>>>
>>>
>>>> -----原始邮件-----
>>>> 发件人: "Richard Townsend" <townsend at astro.wisc.edu>
>>>> 发送时间: 2012年7月28日 星期六
>>>> 收件人: "Ming Yang" <myang at mail.bnu.edu.cn>
>>>> 抄送:
>>>> 主题: Re: Re: [mesa-users] installation error in 4219
>>>>
>>>> Hi Ming --
>>>>
>>>> Can you try running the command 'ulimit -s unlimited', and then do './install' again?
>>>>
>>>> cheers,
>>>>
>>>> Rich
>>>>
>>>> On Jul 28, 2012, at 9:44 AM, Ming Yang wrote:
>>>>
>>>>> Dear Richard:
>>>>> I'm using the mesasdk beta(0622) and Ubuntu 12.04 LTS.
>>>>> "uname -a": Linux deep-epc 3.2.0-27-generic #43-Ubuntu SMP Fri Jul 6 14:46:35 UTC 2012 i686 i686 i386 GNU/Linux
>>>>> The RAM is 2GB
>>>>>
>>>>> Best Regards
>>>>>
>>>>> --
>>>>> --------------------------------------------
>>>>> Ming Yang
>>>>> Department of Astronomy
>>>>> Beijing Normal University
>>>>> 19 Xinjiekou Wai Street
>>>>> Beijing, 100875
>>>>> P.R.China
>>>>> E-mail: myang at mail.bnu.edu.cn
>>>>> --------------------------------------------
>>>>>
>>>>>
>>>>>> -----原始邮件-----
>>>>>> 发件人: "Richard Townsend" <townsend at astro.wisc.edu>
>>>>>> 发送时间: 2012年7月28日 星期六
>>>>>> 收件人: "Ming Yang" <myang at mail.bnu.edu.cn>
>>>>>> 抄送:
>>>>>> 主题: Re: [mesa-users] installation error in 4219
>>>>>>
>>>>>> Hi Ming --
>>>>>>
>>>>>> I'm not able to reproduce the issue on my installation of Ubuntu 12.04.
>>>>>>
>>>>>> Can I ask how much memory (RAM) is installed in your computer?
>>>>>>
>>>>>> cheers,
>>>>>>
>>>>>> Rich
>>>>>>
>>>>>> On Jul 27, 2012, at 10:16 AM, Richard Townsend wrote:
>>>>>>
>>>>>>> OK, I'll see if I can reproduce this issue. What version of the SDK are you using, and what version of Ubuntu? Also, please could you send me the output from 'uname -a'.
>>>>>>>
>>>>>>> cheers,
>>>>>>>
>>>>>>> Rich
>>>>>>>
>>>>>>> On Jul 27, 2012, at 5:23 AM, Ming Yang wrote:
>>>>>>>
>>>>>>>> I have tried, but nothing happened...
>>>>>>>> the log file still shows that
>>>>>>>>
>>>>>>>> failed in stardata_init
>>>>>>>> star_init ierr -1
>>>>>>>>
>>>>>>>> init_and_alloc ierr -1
>>>>>>>>
>>>>>>>> and tmp.txt still empty...
>>>>>>>>
>>>>>>>> btw: I also update MESA to the newest experimental version (4268), still the same error...
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> --
>>>>>>>> --------------------------------------------
>>>>>>>> Ming Yang
>>>>>>>> Department of Astronomy
>>>>>>>> Beijing Normal University
>>>>>>>> 19 Xinjiekou Wai Street
>>>>>>>> Beijing, 100875
>>>>>>>> P.R.China
>>>>>>>> E-mail: myang at mail.bnu.edu.cn
>>>>>>>> --------------------------------------------
>>>>>>>>
>>>>>>>>
>>>>>>>>> -----原始邮件-----
>>>>>>>>> 发件人: "Richard Townsend" <townsend at astro.wisc.edu>
>>>>>>>>> 发送时间: 2012年7月27日 星期五
>>>>>>>>> 收件人: "Ming Yang" <myang at mail.bnu.edu.cn>
>>>>>>>>> 抄送: "Aaron Dotter" <aaron.dotter at gmail.com>, "mesa-users at lists.sourceforge.net" <mesa-users at lists.sourceforge.net>
>>>>>>>>> 主题: Re: Re: [mesa-users] installation error in 4219
>>>>>>>>>
>>>>>>>>> Have you tried running './test_star' in the mesa/star/test directory?
>>>>>>>>>
>>>>>>>>> On Jul 25, 2012, at 4:00 AM, Ming Yang wrote:
>>>>>>>>>
>>>>>>>>>> Dear Richard:
>>>>>>>>>> I'm afraid that I don't know how it be created...the log file only shows this:
>>>>>>>>>>
>>>>>>>>>> failed in stardata_init
>>>>>>>>>> star_init ierr -1
>>>>>>>>>>
>>>>>>>>>> init_and_alloc ierr -1
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> Best Regards
>>>>>>>>>> --
>>>>>>>>>> --------------------------------------------
>>>>>>>>>> Ming Yang
>>>>>>>>>> Department of Astronomy
>>>>>>>>>> Beijing Normal University
>>>>>>>>>> 19 Xinjiekou Wai Street
>>>>>>>>>> Beijing, 100875
>>>>>>>>>> P.R.China
>>>>>>>>>> E-mail: myang at mail.bnu.edu.cn
>>>>>>>>>> --------------------------------------------
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>> -----原始邮件-----
>>>>>>>>>>> 发件人: "Richard Townsend" <townsend at astro.wisc.edu>
>>>>>>>>>>> 发送时间: 2012年7月25日 星期三
>>>>>>>>>>> 收件人: "Ming Yang" <myang at mail.bnu.edu.cn>
>>>>>>>>>>> 抄送: "Aaron Dotter" <aaron.dotter at gmail.com>, "mesa-users at lists.sourceforge.net" <mesa-users at lists.sourceforge.net>
>>>>>>>>>>> 主题: Re: [mesa-users] installation error in 4219
>>>>>>>>>>>
>>>>>>>>>>> To solve this kind of problem, you need to find out *why* tmp.txt is empty. How might you do that? Can you find out how tmp.txt is getting created?
>>>>>>>>>>>
>>>>>>>>>>> On Jul 24, 2012, at 4:59 AM, Ming Yang wrote:
>>>>>>>>>>>
>>>>>>>>>>>> Dear Aaron:
>>>>>>>>>>>> the tmp.txt is empty and test_output contains "stop because star_age >= max_age".
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> Best Regards
>>>>>>>>>>>> --
>>>>>>>>>>>> --------------------------------------------
>>>>>>>>>>>> Ming Yang
>>>>>>>>>>>> Department of Astronomy
>>>>>>>>>>>> Beijing Normal University
>>>>>>>>>>>> 19 Xinjiekou Wai Street
>>>>>>>>>>>> Beijing, 100875
>>>>>>>>>>>> P.R.China
>>>>>>>>>>>> E-mail: myang at mail.bnu.edu.cn
>>>>>>>>>>>> --------------------------------------------
>>>>>>>>>>>>
>>>>>>>>>>>> -----原始邮件-----
>>>>>>>>>>>> 发件人: "Aaron Dotter" <aaron.dotter at gmail.com>
>>>>>>>>>>>> 发送时间: 2012年7月24日 星期二
>>>>>>>>>>>> 收件人: "Ming Yang" <myang at mail.bnu.edu.cn>
>>>>>>>>>>>> 抄送: "mesa-users at lists.sourceforge.net" <mesa-users at lists.sourceforge.net>
>>>>>>>>>>>> 主题: Re: [mesa-users] installation error in 4219
>>>>>>>>>>>>
>>>>>>>>>>>> Hi,
>>>>>>>>>>>>
>>>>>>>>>>>> The error message says
>>>>>>>>>>>>
>>>>>>>>>>>> "/home/deep/opt/mesa/star/test
>>>>>>>>>>>> TEST FAILED -- compare test_output to tmp.txt"
>>>>>>>>>>>>
>>>>>>>>>>>> So what do these two files contain?
>>>>>>>>>>>>
>>>>>>>>>>>> Aaron
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> On Monday, July 23, 2012, Ming Yang wrote:
>>>>>>>>>>>> Dear all,
>>>>>>>>>>>> Still, a fatal error coming up when installing 4219...I'm using mesasdk....
>>>>>>>>>>>>
>>>>>>>>>>>> gfortran -fno-range-check -fopenmp -I../../make -I../../public -I../../../include -I/home/deep/opt/mesasdk/include -fbounds-check -Wuninitialized -Warray-bounds -g -c -ffree-form -x f95-cpp-input ../src/run_star_extras.f
>>>>>>>>>>>> gfortran -fno-range-check -fopenmp -I../../make -I../../public -I../../../include -I/home/deep/opt/mesasdk/include -fbounds-check -Wuninitialized -Warray-bounds -g -c -ffree-form -x f95-cpp-input ../src/run_star.f
>>>>>>>>>>>> gfortran -fno-range-check -fopenmp -I../../make -I../../public -I../../../include -I/home/deep/opt/mesasdk/include -fbounds-check -Wuninitialized -Warray-bounds -g -c -ffree-form -x f95-cpp-input ../src/run.f
>>>>>>>>>>>> gfortran -fno-range-check -fopenmp -o ../star \
>>>>>>>>>>>> run_star_extras.o run_star.o run.o -L../../make -lstar -L../../../lib -ldiffusion -lionization -latm -lcolors -lmlt -lnet -leos -lkap -lscreen -lrates -lreaclib -lweak -lneu -lchem -linterp_2d -linterp_1d -lnum -lutils -lalert -lmtx -lconst -lmesaklu `mesasdk_lapack_link` `mesasdk_blas_link` `mesasdk_pgplot_link` `mesasdk_se_link`
>>>>>>>>>>>>
>>>>>>>>>>>> first file is short
>>>>>>>>>>>>
>>>>>>>>>>>> /home/deep/opt/mesa/star/test
>>>>>>>>>>>> TEST FAILED -- compare test_output to tmp.txt
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> /home/deep/opt/mesa/star
>>>>>>>>>>>> ./build_and_test FAILED
>>>>>>>>>>>>
>>>>>>>>>>>> What's going on here?...
>>>>>>>>>>>>
>>>>>>>>>>>> --
>>>>>>>>>>>> --------------------------------------------
>>>>>>>>>>>> Ming Yang
>>>>>>>>>>>> Department of Astronomy
>>>>>>>>>>>> Beijing Normal University
>>>>>>>>>>>> 19 Xinjiekou Wai Street
>>>>>>>>>>>> Beijing, 100875
>>>>>>>>>>>> P.R.China
>>>>>>>>>>>> E-mail: myang at mail.bnu.edu.cn
>>>>>>>>>>>> --------------------------------------------
>>>>>>>>>>>> ------------------------------------------------------------------------------
>>>>>>>>>>>> Live Security Virtual Conference
>>>>>>>>>>>> Exclusive live event will cover all the ways today's security and
>>>>>>>>>>>> threat landscape has changed and how IT managers can respond. Discussions
>>>>>>>>>>>> will include endpoint security, mobile security and the latest in malware
>>>>>>>>>>>> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/_______________________________________________
>>>>>>>>>>>> mesa-users mailing list
>>>>>>>>>>>> mesa-users at lists.sourceforge.net
>>>>>>>>>>>> https://lists.sourceforge.net/lists/listinfo/mesa-users
>
> ------------------------------------------------------------------------------
> Live Security Virtual Conference
> Exclusive live event will cover all the ways today's security and
> threat landscape has changed and how IT managers can respond. Discussions
> will include endpoint security, mobile security and the latest in malware
> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/
> _______________________________________________
> mesa-users mailing list
> mesa-users at lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/mesa-users
More information about the Mesa-users
mailing list