[mesa-users] Installing MESA
Jared Brooks
brooksjaredc at gmail.com
Wed Apr 11 18:22:07 EDT 2012
This time when I ran 'which gfortran' the output wasn't empty so I thought
I would try running ./install again and it seems to be running
successfully. I will let you know if I run into any more problems. Thanks
for your help.
-Jared
On Wed, Apr 11, 2012 at 3:10 PM, Richard Townsend
<townsend at astro.wisc.edu>wrote:
> Can you run *exactly* the following steps and send me the *exact* output:
>
> source /opt/mesasdk/bin/mesasdk_init.sh
> which gfortran
> echo $PATH
>
> On Apr 11, 2012, at 5:08 PM, Jared Brooks wrote:
>
> jared at ubuntu:~/mesa$ ./install
> checking if ndiff is installed ...
> yes!
>
> /home/jared/mesa/const
> building const package.
>
> gfortran -fno-range-check -fopenmp -I../public -I../private
> -I../../include -Wunused-value -Werror -W -fimplicit-none -O2 -c
> -ffixed-form -ffixed-line-length-132 ../public/const_def.f
> make: gfortran: Command not found
> make: *** [const_def.o] Error 127
>
> /home/jared/mesa/const/make
> FAILED
>
>
> /home/jared/mesa/const
> ./build_and_test FAILED
>
> jared at ubuntu:~/mesa$ which gfortran
> jared at ubuntu:~/mesa$ echo $MESASDK_ROOT
> /opt/mesasdk
> jared at ubuntu:~/mesa$ echo $PATH
>
> /usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
>
>
> On Wed, Apr 11, 2012 at 3:02 PM, Richard Townsend <townsend at astro.wisc.edu
> > wrote:
>
>> OK, the script isn't supposed to produce any output. So, progress is
>> being made.
>>
>> When you say 'the same result', do you mean the 'gfortran: Command not
>> found error'? If so, please repeat these steps after you get the error:
>>
>> which gfortran
>>
>> echo $MESASDK_ROOT
>>
>> echo $PATH
>>
>> cheers,
>>
>> Rich
>>
>> On Apr 11, 2012, at 4:57 PM, Jared Brooks wrote:
>>
>> I can execute 'more mesasdk_init.sh', and I can even run the script now,
>> but it gives no output. Running ./install in /mesa still gives the same
>> result.
>>
>> -Jared
>>
>> On Wed, Apr 11, 2012 at 2:52 PM, Richard Townsend <
>> townsend at astro.wisc.edu> wrote:
>>
>>> OK, thanks. Are you still unable to execute 'more mesasdk_init.sh'?
>>>
>>> On Apr 11, 2012, at 4:50 PM, Jared Brooks wrote:
>>>
>>> jared at ubuntu:/opt/mesasdk/bin$ ls -l /opt/mesasdk/bin
>>> total 24536
>>> -rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 c++
>>> -rwxr-xr-x 1 500 500 2150346 2012-01-20 09:54 cpp
>>> -rwxr-xr-x 1 500 500 77266 2012-01-20 10:03 fpx3
>>> -rwxr-xr-x 1 500 500 2564 2012-01-20 10:03 fpx3_deps
>>> -rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 g++
>>> -rwxr-xr-x 3 500 500 2147774 2012-01-20 09:54 gcc
>>> -rwxr-xr-x 2 500 500 119881 2012-01-20 09:54 gcc-ar
>>> -rwxr-xr-x 2 500 500 119817 2012-01-20 09:54 gcc-nm
>>> -rwxr-xr-x 2 500 500 119837 2012-01-20 09:54 gcc-ranlib
>>> -rwxr-xr-x 1 500 500 1086658 2012-01-20 09:54 gcov
>>> -rwxr-xr-x 2 500 500 2160578 2012-01-20 09:54 gfortran
>>> -rwxr-xr-x 1 500 500 41082 2012-01-20 10:02 gif2h5
>>> -rwxr-xr-x 1 500 500 38244 2012-01-20 10:02 h52gif
>>> -rwxr-xr-x 1 500 500 12551 2012-01-20 10:02 h5cc
>>> -rwxr-xr-x 1 500 500 112948 2012-01-20 10:02 h5copy
>>> -rwxr-xr-x 1 500 500 19590 2012-01-20 10:02 h5debug
>>> -rwxr-xr-x 1 500 500 229329 2012-01-20 10:02 h5diff
>>> -rwxr-xr-x 1 500 500 197313 2012-01-20 10:02 h5dump
>>> -rwxr-xr-x 1 500 500 11693 2012-01-20 10:02 h5fc
>>> -rwxr-xr-x 1 500 500 79908 2012-01-20 10:02 h5import
>>> -rwxr-xr-x 1 500 500 35368 2012-01-20 10:02 h5jam
>>> -rwxr-xr-x 1 500 500 141757 2012-01-20 10:02 h5ls
>>> -rwxr-xr-x 1 500 500 111278 2012-01-20 10:02 h5mkgrp
>>> -rwxr-xr-x 1 500 500 69706 2012-01-20 10:02 h5perf_serial
>>> -rwxr-xr-x 1 500 500 4434 2012-01-20 10:02 h5redeploy
>>> -rwxr-xr-x 1 500 500 169697 2012-01-20 10:02 h5repack
>>> -rwxr-xr-x 1 500 500 15639 2012-01-20 10:02 h5repart
>>> -rwxr-xr-x 1 500 500 122193 2012-01-20 10:02 h5stat
>>> -rwxr-xr-x 1 500 500 32235 2012-01-20 10:02 h5unjam
>>> -rwxr-xr-x 1 500 500 1137 2012-01-20 10:03 mesasdk_arch_check.pl
>>> -rwxr-xr-x 1 500 500 71 2012-01-20 09:55 mesasdk_blas_link
>>> -rwxr-xr-x 1 500 500 89 2012-01-20 10:03 mesasdk_hdf5_link
>>> -rwxr-xr-x 1 500 500 835 2012-01-20 10:03 mesasdk_init.csh
>>> -rwxr-xr-x 1 500 500 611 2012-01-20 10:03 mesasdk_init.sh
>>> -rwxr-xr-x 1 500 500 101 2012-01-20 09:58 mesasdk_lapack95_link
>>> -rwxr-xr-x 1 500 500 95 2012-01-20 09:56 mesasdk_lapack_link
>>> -rwxr-xr-x 1 500 500 83 2012-01-20 09:58 mesasdk_pgplot_link
>>> -rwxr-xr-x 1 500 500 86 2012-01-20 10:03 mesasdk_se_link
>>> -rwxr-xr-x 2 500 500 42426 2012-01-20 10:03 ndiff
>>> -rwxr-xr-x 2 500 500 42426 2012-01-20 10:03 ndiff-2.00
>>> -rwxr-xr-x 1 500 500 12512 2012-01-20 10:03 touchse
>>> -rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 x86_64-pc-linux-gnu-c++
>>> -rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 x86_64-pc-linux-gnu-g++
>>> -rwxr-xr-x 3 500 500 2147774 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc
>>> -rwxr-xr-x 3 500 500 2147774 2012-01-20 09:54
>>> x86_64-pc-linux-gnu-gcc-4.7.0
>>> -rwxr-xr-x 2 500 500 119881 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc-ar
>>> -rwxr-xr-x 2 500 500 119817 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc-nm
>>> -rwxr-xr-x 2 500 500 119837 2012-01-20 09:54
>>> x86_64-pc-linux-gnu-gcc-ranlib
>>> -rwxr-xr-x 2 500 500 2160578 2012-01-20 09:54
>>> x86_64-pc-linux-gnu-gfortran
>>>
>>>
>>> Here's the file I unpacked into /opt:
>>> mesasdk-x86_64-linux-20120120.tar.gz
>>>
>>>
>>> On Wed, Apr 11, 2012 at 2:48 PM, Richard Townsend <
>>> townsend at astro.wisc.edu> wrote:
>>>
>>>> Please could you send the new 'ls -l', and also let me know the actual
>>>> name of the file you unpacked into /opt.
>>>>
>>>> cheers,
>>>>
>>>> Rich
>>>>
>>>> On Apr 11, 2012, at 4:46 PM, Jared Brooks wrote:
>>>>
>>>> I changed those permissions, and those changes were reflected by a ls
>>>> -l, but it is still denying me permission.
>>>>
>>>> I downloaded the Linux 64 bit SDK from this page:
>>>> http://www.astro.wisc.edu/~townsend/static.php?ref=mesasdk
>>>>
>>>> -Jared
>>>>
>>>> On Wed, Apr 11, 2012 at 2:37 PM, Richard Townsend <
>>>> townsend at astro.wisc.edu> wrote:
>>>>
>>>>> As root user, execute the following:
>>>>>
>>>>> chmod 755 /opt/mesasdk/bin/mesasdk_init.csh
>>>>> chmod 755 /opt/mesasdk/bin/mesasdk_init.sh
>>>>>
>>>>> I'm not sure what led to this problem; what version of the SDK are you
>>>>> using (i.e., what file did you download)?
>>>>>
>>>>> cheers,
>>>>>
>>>>> Rich
>>>>>
>>>>> On Apr 11, 2012, at 4:34 PM, Jared Brooks wrote:
>>>>>
>>>>> jared at ubuntu:/opt/mesasdk/bin$ ls -l /opt/mesasdk/bin
>>>>> total 24536
>>>>> -rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 c++
>>>>> -rwxr-xr-x 1 500 500 2150346 2012-01-20 09:54 cpp
>>>>> -rwxr-xr-x 1 500 500 77266 2012-01-20 10:03 fpx3
>>>>> -rwxr-xr-x 1 500 500 2564 2012-01-20 10:03 fpx3_deps
>>>>> -rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 g++
>>>>> -rwxr-xr-x 3 500 500 2147774 2012-01-20 09:54 gcc
>>>>> -rwxr-xr-x 2 500 500 119881 2012-01-20 09:54 gcc-ar
>>>>> -rwxr-xr-x 2 500 500 119817 2012-01-20 09:54 gcc-nm
>>>>> -rwxr-xr-x 2 500 500 119837 2012-01-20 09:54 gcc-ranlib
>>>>> -rwxr-xr-x 1 500 500 1086658 2012-01-20 09:54 gcov
>>>>> -rwxr-xr-x 2 500 500 2160578 2012-01-20 09:54 gfortran
>>>>> -rwxr-xr-x 1 500 500 41082 2012-01-20 10:02 gif2h5
>>>>> -rwxr-xr-x 1 500 500 38244 2012-01-20 10:02 h52gif
>>>>> -rwxr-xr-x 1 500 500 12551 2012-01-20 10:02 h5cc
>>>>> -rwxr-xr-x 1 500 500 112948 2012-01-20 10:02 h5copy
>>>>> -rwxr-xr-x 1 500 500 19590 2012-01-20 10:02 h5debug
>>>>> -rwxr-xr-x 1 500 500 229329 2012-01-20 10:02 h5diff
>>>>> -rwxr-xr-x 1 500 500 197313 2012-01-20 10:02 h5dump
>>>>> -rwxr-xr-x 1 500 500 11693 2012-01-20 10:02 h5fc
>>>>> -rwxr-xr-x 1 500 500 79908 2012-01-20 10:02 h5import
>>>>> -rwxr-xr-x 1 500 500 35368 2012-01-20 10:02 h5jam
>>>>> -rwxr-xr-x 1 500 500 141757 2012-01-20 10:02 h5ls
>>>>> -rwxr-xr-x 1 500 500 111278 2012-01-20 10:02 h5mkgrp
>>>>> -rwxr-xr-x 1 500 500 69706 2012-01-20 10:02 h5perf_serial
>>>>> -rwxr-xr-x 1 500 500 4434 2012-01-20 10:02 h5redeploy
>>>>> -rwxr-xr-x 1 500 500 169697 2012-01-20 10:02 h5repack
>>>>> -rwxr-xr-x 1 500 500 15639 2012-01-20 10:02 h5repart
>>>>> -rwxr-xr-x 1 500 500 122193 2012-01-20 10:02 h5stat
>>>>> -rwxr-xr-x 1 500 500 32235 2012-01-20 10:02 h5unjam
>>>>> -rwxr-xr-x 1 500 500 1137 2012-01-20 10:03 mesasdk_arch_check.pl
>>>>> -rwxr-xr-x 1 500 500 71 2012-01-20 09:55 mesasdk_blas_link
>>>>> -rwxr-xr-x 1 500 500 89 2012-01-20 10:03 mesasdk_hdf5_link
>>>>> -rwxrwx--- 1 500 500 835 2012-01-20 10:03 mesasdk_init.csh
>>>>> -rwxrwx--- 1 500 500 611 2012-01-20 10:03 mesasdk_init.sh
>>>>> -rwxr-xr-x 1 500 500 101 2012-01-20 09:58 mesasdk_lapack95_link
>>>>> -rwxr-xr-x 1 500 500 95 2012-01-20 09:56 mesasdk_lapack_link
>>>>> -rwxr-xr-x 1 500 500 83 2012-01-20 09:58 mesasdk_pgplot_link
>>>>> -rwxr-xr-x 1 500 500 86 2012-01-20 10:03 mesasdk_se_link
>>>>> -rwxr-xr-x 2 500 500 42426 2012-01-20 10:03 ndiff
>>>>> -rwxr-xr-x 2 500 500 42426 2012-01-20 10:03 ndiff-2.00
>>>>> -rwxr-xr-x 1 500 500 12512 2012-01-20 10:03 touchse
>>>>> -rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 x86_64-pc-linux-gnu-c++
>>>>> -rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 x86_64-pc-linux-gnu-g++
>>>>> -rwxr-xr-x 3 500 500 2147774 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc
>>>>> -rwxr-xr-x 3 500 500 2147774 2012-01-20 09:54
>>>>> x86_64-pc-linux-gnu-gcc-4.7.0
>>>>> -rwxr-xr-x 2 500 500 119881 2012-01-20 09:54
>>>>> x86_64-pc-linux-gnu-gcc-ar
>>>>> -rwxr-xr-x 2 500 500 119817 2012-01-20 09:54
>>>>> x86_64-pc-linux-gnu-gcc-nm
>>>>> -rwxr-xr-x 2 500 500 119837 2012-01-20 09:54
>>>>> x86_64-pc-linux-gnu-gcc-ranlib
>>>>> -rwxr-xr-x 2 500 500 2160578 2012-01-20 09:54
>>>>> x86_64-pc-linux-gnu-gfortran
>>>>> jared at ubuntu:/opt/mesasdk/bin$ more mesasdk_init.sh
>>>>> mesasdk_init.sh: Permission denied
>>>>>
>>>>> It looks like I should be able to access all these files, but for some
>>>>> reason it's still keeping me out
>>>>>
>>>>> -Jared
>>>>>
>>>>>
>>>>> On Wed, Apr 11, 2012 at 2:30 PM, Richard Townsend <
>>>>> townsend at astro.wisc.edu> wrote:
>>>>>
>>>>>> Could you post the output from 'ls -l /opt/mesasdk/bin'. That will
>>>>>> show what permission problems may exist.
>>>>>>
>>>>>> On Apr 11, 2012, at 4:27 PM, Jared Brooks wrote:
>>>>>>
>>>>>> Here's a command I found concerning PATH in my .profile:
>>>>>>
>>>>>> # set PATH so it includes user's private bin if it exists
>>>>>> if [ -d "$HOME/bin" ] ; then
>>>>>> PATH="$HOME/bin:$PATH"
>>>>>> fi
>>>>>>
>>>>>> And here's the output to that source command:
>>>>>>
>>>>>> jared at ubuntu:~/mesa$ source $MESASDK_ROOT/bin/mesasdk_init.sh
>>>>>> bash: /opt/mesasdk/bin/mesasdk_init.sh: Permission denied
>>>>>>
>>>>>> I've had a hunch that permissions were at the source of my problems,
>>>>>> but I still don't understand why it's keeping me out.
>>>>>>
>>>>>> -Jared
>>>>>>
>>>>>> On Wed, Apr 11, 2012 at 2:20 PM, Richard Townsend <
>>>>>> townsend at astro.wisc.edu> wrote:
>>>>>>
>>>>>>> OK, thanks. Please post the output when you run
>>>>>>>
>>>>>>> source $MESASDK_ROOT/bin/mesasdk_init.sh
>>>>>>>
>>>>>>> Also, please confirm that you don't have anything else in your
>>>>>>> .profile startup script which overwrites the PATH environment variable.
>>>>>>>
>>>>>>> cheers,
>>>>>>>
>>>>>>> Rich
>>>>>>>
>>>>>>> On Apr 11, 2012, at 4:17 PM, Jared Brooks wrote:
>>>>>>>
>>>>>>> jared at ubuntu:~/mesa$ which gfortran
>>>>>>> jared at ubuntu:~/mesa$ echo $MESASDK_ROOT
>>>>>>> /opt/mesasdk
>>>>>>> jared at ubuntu:~/mesa$ echo $PATH
>>>>>>>
>>>>>>> /usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
>>>>>>>
>>>>>>> -Jared
>>>>>>>
>>>>>>> On Wed, Apr 11, 2012 at 2:14 PM, Richard Townsend <
>>>>>>> townsend at astro.wisc.edu> wrote:
>>>>>>>
>>>>>>>> After you get the 'make: gfortran: Command not found', please run
>>>>>>>> the following commands and post the output:
>>>>>>>>
>>>>>>>> which gfortran
>>>>>>>>
>>>>>>>> echo $MESASDK_ROOT
>>>>>>>>
>>>>>>>> echo $PATH
>>>>>>>>
>>>>>>>> cheers,
>>>>>>>>
>>>>>>>> Rich
>>>>>>>>
>>>>>>>> On Apr 11, 2012, at 4:10 PM, Jared Brooks wrote:
>>>>>>>>
>>>>>>>> I have had these commands in my .profile
>>>>>>>>
>>>>>>>> export MESASDK_ROOT=/opt/mesasdk
>>>>>>>> source $MESASDK_ROOT/bin/mesasdk_init.sh
>>>>>>>> export OMP_NUM_THREADS=4
>>>>>>>> export LIBRARY_PATH=/usr/lib/x86_64-linux-gnu
>>>>>>>> export LD_RUN_PATH=/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu
>>>>>>>>
>>>>>>>> -Jared
>>>>>>>>
>>>>>>>> On Wed, Apr 11, 2012 at 1:53 PM, Richard Townsend <
>>>>>>>> townsend at astro.wisc.edu> wrote:
>>>>>>>>
>>>>>>>>> Have you initialized the SDK properly using the appropriate
>>>>>>>>> script? You have to do this each time you log in -- or add a line to your
>>>>>>>>> start-up file (.cshrc, .bashrc, etc.)
>>>>>>>>>
>>>>>>>>> On Apr 11, 2012, at 3:33 PM, Jared Brooks wrote:
>>>>>>>>>
>>>>>>>>> > Hello, I'm running Ubuntu and I can't get MESA installed
>>>>>>>>> completely. I'm using the MESA_SDK and I followed the FAQ, yet I'm still
>>>>>>>>> stuck. I got the install script to run for a few hours before it stopped
>>>>>>>>> and now will only give me this:
>>>>>>>>> >
>>>>>>>>> > jared at ubuntu:~/mesa$ ./install
>>>>>>>>> > checking if ndiff is installed ...
>>>>>>>>> > yes!
>>>>>>>>> >
>>>>>>>>> > /home/jared/mesa/const
>>>>>>>>> > building const package.
>>>>>>>>> >
>>>>>>>>> > gfortran -fno-range-check -fopenmp -I../public -I../private
>>>>>>>>> -I../../include -Wunused-value -Werror -W -fimplicit-none -O2 -c
>>>>>>>>> -ffixed-form -ffixed-line-length-132 ../public/const_def.f
>>>>>>>>> > make: gfortran: Command not found
>>>>>>>>> > make: *** [const_def.o] Error 127
>>>>>>>>> >
>>>>>>>>> > /home/jared/mesa/const/make
>>>>>>>>> > FAILED
>>>>>>>>> >
>>>>>>>>> >
>>>>>>>>> > /home/jared/mesa/const
>>>>>>>>> > ./build_and_test FAILED
>>>>>>>>> >
>>>>>>>>> >
>>>>>>>>> > And I found this message in the file mesa/const/test/tmp.txt:
>>>>>>>>> >
>>>>>>>>> > ./tester: error while loading shared libraries:
>>>>>>>>> libgfortran.so.3: cannot open shared object file: No such file or directory
>>>>>>>>> >
>>>>>>>>> > I found the file libgfortran.so.3 in /opt/mesasdk/lib64/, it
>>>>>>>>> seems to be just a pointer to libgfortran.so.3.0.0.
>>>>>>>>> >
>>>>>>>>> > -Jared
>>>>>>>>> >
>>>>>>>>> ------------------------------------------------------------------------------
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>>>>>>>>> >
>>>>>>>>> http://p.sf.net/sfu/Boundary-dev2dev_______________________________________________
>>>>>>>>> > mesa-users mailing list
>>>>>>>>> > mesa-users at lists.sourceforge.net
>>>>>>>>> > https://lists.sourceforge.net/lists/listinfo/mesa-users
>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>
>>>
>>
>>
>
>
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