[mesa-users] Installing MESA
Richard Townsend
townsend at astro.wisc.edu
Wed Apr 11 17:52:09 EDT 2012
OK, thanks. Are you still unable to execute 'more mesasdk_init.sh'?
On Apr 11, 2012, at 4:50 PM, Jared Brooks wrote:
> jared at ubuntu:/opt/mesasdk/bin$ ls -l /opt/mesasdk/bin
> total 24536
> -rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 c++
> -rwxr-xr-x 1 500 500 2150346 2012-01-20 09:54 cpp
> -rwxr-xr-x 1 500 500 77266 2012-01-20 10:03 fpx3
> -rwxr-xr-x 1 500 500 2564 2012-01-20 10:03 fpx3_deps
> -rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 g++
> -rwxr-xr-x 3 500 500 2147774 2012-01-20 09:54 gcc
> -rwxr-xr-x 2 500 500 119881 2012-01-20 09:54 gcc-ar
> -rwxr-xr-x 2 500 500 119817 2012-01-20 09:54 gcc-nm
> -rwxr-xr-x 2 500 500 119837 2012-01-20 09:54 gcc-ranlib
> -rwxr-xr-x 1 500 500 1086658 2012-01-20 09:54 gcov
> -rwxr-xr-x 2 500 500 2160578 2012-01-20 09:54 gfortran
> -rwxr-xr-x 1 500 500 41082 2012-01-20 10:02 gif2h5
> -rwxr-xr-x 1 500 500 38244 2012-01-20 10:02 h52gif
> -rwxr-xr-x 1 500 500 12551 2012-01-20 10:02 h5cc
> -rwxr-xr-x 1 500 500 112948 2012-01-20 10:02 h5copy
> -rwxr-xr-x 1 500 500 19590 2012-01-20 10:02 h5debug
> -rwxr-xr-x 1 500 500 229329 2012-01-20 10:02 h5diff
> -rwxr-xr-x 1 500 500 197313 2012-01-20 10:02 h5dump
> -rwxr-xr-x 1 500 500 11693 2012-01-20 10:02 h5fc
> -rwxr-xr-x 1 500 500 79908 2012-01-20 10:02 h5import
> -rwxr-xr-x 1 500 500 35368 2012-01-20 10:02 h5jam
> -rwxr-xr-x 1 500 500 141757 2012-01-20 10:02 h5ls
> -rwxr-xr-x 1 500 500 111278 2012-01-20 10:02 h5mkgrp
> -rwxr-xr-x 1 500 500 69706 2012-01-20 10:02 h5perf_serial
> -rwxr-xr-x 1 500 500 4434 2012-01-20 10:02 h5redeploy
> -rwxr-xr-x 1 500 500 169697 2012-01-20 10:02 h5repack
> -rwxr-xr-x 1 500 500 15639 2012-01-20 10:02 h5repart
> -rwxr-xr-x 1 500 500 122193 2012-01-20 10:02 h5stat
> -rwxr-xr-x 1 500 500 32235 2012-01-20 10:02 h5unjam
> -rwxr-xr-x 1 500 500 1137 2012-01-20 10:03 mesasdk_arch_check.pl
> -rwxr-xr-x 1 500 500 71 2012-01-20 09:55 mesasdk_blas_link
> -rwxr-xr-x 1 500 500 89 2012-01-20 10:03 mesasdk_hdf5_link
> -rwxr-xr-x 1 500 500 835 2012-01-20 10:03 mesasdk_init.csh
> -rwxr-xr-x 1 500 500 611 2012-01-20 10:03 mesasdk_init.sh
> -rwxr-xr-x 1 500 500 101 2012-01-20 09:58 mesasdk_lapack95_link
> -rwxr-xr-x 1 500 500 95 2012-01-20 09:56 mesasdk_lapack_link
> -rwxr-xr-x 1 500 500 83 2012-01-20 09:58 mesasdk_pgplot_link
> -rwxr-xr-x 1 500 500 86 2012-01-20 10:03 mesasdk_se_link
> -rwxr-xr-x 2 500 500 42426 2012-01-20 10:03 ndiff
> -rwxr-xr-x 2 500 500 42426 2012-01-20 10:03 ndiff-2.00
> -rwxr-xr-x 1 500 500 12512 2012-01-20 10:03 touchse
> -rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 x86_64-pc-linux-gnu-c++
> -rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 x86_64-pc-linux-gnu-g++
> -rwxr-xr-x 3 500 500 2147774 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc
> -rwxr-xr-x 3 500 500 2147774 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc-4.7.0
> -rwxr-xr-x 2 500 500 119881 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc-ar
> -rwxr-xr-x 2 500 500 119817 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc-nm
> -rwxr-xr-x 2 500 500 119837 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc-ranlib
> -rwxr-xr-x 2 500 500 2160578 2012-01-20 09:54 x86_64-pc-linux-gnu-gfortran
>
>
> Here's the file I unpacked into /opt: mesasdk-x86_64-linux-20120120.tar.gz
>
>
> On Wed, Apr 11, 2012 at 2:48 PM, Richard Townsend <townsend at astro.wisc.edu> wrote:
> Please could you send the new 'ls -l', and also let me know the actual name of the file you unpacked into /opt.
>
> cheers,
>
> Rich
>
> On Apr 11, 2012, at 4:46 PM, Jared Brooks wrote:
>
>> I changed those permissions, and those changes were reflected by a ls -l, but it is still denying me permission.
>>
>> I downloaded the Linux 64 bit SDK from this page: http://www.astro.wisc.edu/~townsend/static.php?ref=mesasdk
>>
>> -Jared
>>
>> On Wed, Apr 11, 2012 at 2:37 PM, Richard Townsend <townsend at astro.wisc.edu> wrote:
>> As root user, execute the following:
>>
>> chmod 755 /opt/mesasdk/bin/mesasdk_init.csh
>> chmod 755 /opt/mesasdk/bin/mesasdk_init.sh
>>
>> I'm not sure what led to this problem; what version of the SDK are you using (i.e., what file did you download)?
>>
>> cheers,
>>
>> Rich
>>
>> On Apr 11, 2012, at 4:34 PM, Jared Brooks wrote:
>>
>>> jared at ubuntu:/opt/mesasdk/bin$ ls -l /opt/mesasdk/bin
>>> total 24536
>>> -rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 c++
>>> -rwxr-xr-x 1 500 500 2150346 2012-01-20 09:54 cpp
>>> -rwxr-xr-x 1 500 500 77266 2012-01-20 10:03 fpx3
>>> -rwxr-xr-x 1 500 500 2564 2012-01-20 10:03 fpx3_deps
>>> -rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 g++
>>> -rwxr-xr-x 3 500 500 2147774 2012-01-20 09:54 gcc
>>> -rwxr-xr-x 2 500 500 119881 2012-01-20 09:54 gcc-ar
>>> -rwxr-xr-x 2 500 500 119817 2012-01-20 09:54 gcc-nm
>>> -rwxr-xr-x 2 500 500 119837 2012-01-20 09:54 gcc-ranlib
>>> -rwxr-xr-x 1 500 500 1086658 2012-01-20 09:54 gcov
>>> -rwxr-xr-x 2 500 500 2160578 2012-01-20 09:54 gfortran
>>> -rwxr-xr-x 1 500 500 41082 2012-01-20 10:02 gif2h5
>>> -rwxr-xr-x 1 500 500 38244 2012-01-20 10:02 h52gif
>>> -rwxr-xr-x 1 500 500 12551 2012-01-20 10:02 h5cc
>>> -rwxr-xr-x 1 500 500 112948 2012-01-20 10:02 h5copy
>>> -rwxr-xr-x 1 500 500 19590 2012-01-20 10:02 h5debug
>>> -rwxr-xr-x 1 500 500 229329 2012-01-20 10:02 h5diff
>>> -rwxr-xr-x 1 500 500 197313 2012-01-20 10:02 h5dump
>>> -rwxr-xr-x 1 500 500 11693 2012-01-20 10:02 h5fc
>>> -rwxr-xr-x 1 500 500 79908 2012-01-20 10:02 h5import
>>> -rwxr-xr-x 1 500 500 35368 2012-01-20 10:02 h5jam
>>> -rwxr-xr-x 1 500 500 141757 2012-01-20 10:02 h5ls
>>> -rwxr-xr-x 1 500 500 111278 2012-01-20 10:02 h5mkgrp
>>> -rwxr-xr-x 1 500 500 69706 2012-01-20 10:02 h5perf_serial
>>> -rwxr-xr-x 1 500 500 4434 2012-01-20 10:02 h5redeploy
>>> -rwxr-xr-x 1 500 500 169697 2012-01-20 10:02 h5repack
>>> -rwxr-xr-x 1 500 500 15639 2012-01-20 10:02 h5repart
>>> -rwxr-xr-x 1 500 500 122193 2012-01-20 10:02 h5stat
>>> -rwxr-xr-x 1 500 500 32235 2012-01-20 10:02 h5unjam
>>> -rwxr-xr-x 1 500 500 1137 2012-01-20 10:03 mesasdk_arch_check.pl
>>> -rwxr-xr-x 1 500 500 71 2012-01-20 09:55 mesasdk_blas_link
>>> -rwxr-xr-x 1 500 500 89 2012-01-20 10:03 mesasdk_hdf5_link
>>> -rwxrwx--- 1 500 500 835 2012-01-20 10:03 mesasdk_init.csh
>>> -rwxrwx--- 1 500 500 611 2012-01-20 10:03 mesasdk_init.sh
>>> -rwxr-xr-x 1 500 500 101 2012-01-20 09:58 mesasdk_lapack95_link
>>> -rwxr-xr-x 1 500 500 95 2012-01-20 09:56 mesasdk_lapack_link
>>> -rwxr-xr-x 1 500 500 83 2012-01-20 09:58 mesasdk_pgplot_link
>>> -rwxr-xr-x 1 500 500 86 2012-01-20 10:03 mesasdk_se_link
>>> -rwxr-xr-x 2 500 500 42426 2012-01-20 10:03 ndiff
>>> -rwxr-xr-x 2 500 500 42426 2012-01-20 10:03 ndiff-2.00
>>> -rwxr-xr-x 1 500 500 12512 2012-01-20 10:03 touchse
>>> -rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 x86_64-pc-linux-gnu-c++
>>> -rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 x86_64-pc-linux-gnu-g++
>>> -rwxr-xr-x 3 500 500 2147774 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc
>>> -rwxr-xr-x 3 500 500 2147774 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc-4.7.0
>>> -rwxr-xr-x 2 500 500 119881 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc-ar
>>> -rwxr-xr-x 2 500 500 119817 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc-nm
>>> -rwxr-xr-x 2 500 500 119837 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc-ranlib
>>> -rwxr-xr-x 2 500 500 2160578 2012-01-20 09:54 x86_64-pc-linux-gnu-gfortran
>>> jared at ubuntu:/opt/mesasdk/bin$ more mesasdk_init.sh
>>> mesasdk_init.sh: Permission denied
>>>
>>> It looks like I should be able to access all these files, but for some reason it's still keeping me out
>>>
>>> -Jared
>>>
>>>
>>> On Wed, Apr 11, 2012 at 2:30 PM, Richard Townsend <townsend at astro.wisc.edu> wrote:
>>> Could you post the output from 'ls -l /opt/mesasdk/bin'. That will show what permission problems may exist.
>>>
>>> On Apr 11, 2012, at 4:27 PM, Jared Brooks wrote:
>>>
>>>> Here's a command I found concerning PATH in my .profile:
>>>>
>>>> # set PATH so it includes user's private bin if it exists
>>>> if [ -d "$HOME/bin" ] ; then
>>>> PATH="$HOME/bin:$PATH"
>>>> fi
>>>>
>>>> And here's the output to that source command:
>>>>
>>>> jared at ubuntu:~/mesa$ source $MESASDK_ROOT/bin/mesasdk_init.sh
>>>> bash: /opt/mesasdk/bin/mesasdk_init.sh: Permission denied
>>>>
>>>> I've had a hunch that permissions were at the source of my problems, but I still don't understand why it's keeping me out.
>>>>
>>>> -Jared
>>>>
>>>> On Wed, Apr 11, 2012 at 2:20 PM, Richard Townsend <townsend at astro.wisc.edu> wrote:
>>>> OK, thanks. Please post the output when you run
>>>>
>>>> source $MESASDK_ROOT/bin/mesasdk_init.sh
>>>>
>>>> Also, please confirm that you don't have anything else in your .profile startup script which overwrites the PATH environment variable.
>>>>
>>>> cheers,
>>>>
>>>> Rich
>>>>
>>>> On Apr 11, 2012, at 4:17 PM, Jared Brooks wrote:
>>>>
>>>>> jared at ubuntu:~/mesa$ which gfortran
>>>>> jared at ubuntu:~/mesa$ echo $MESASDK_ROOT
>>>>> /opt/mesasdk
>>>>> jared at ubuntu:~/mesa$ echo $PATH
>>>>> /usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
>>>>>
>>>>> -Jared
>>>>>
>>>>> On Wed, Apr 11, 2012 at 2:14 PM, Richard Townsend <townsend at astro.wisc.edu> wrote:
>>>>> After you get the 'make: gfortran: Command not found', please run the following commands and post the output:
>>>>>
>>>>> which gfortran
>>>>>
>>>>> echo $MESASDK_ROOT
>>>>>
>>>>> echo $PATH
>>>>>
>>>>> cheers,
>>>>>
>>>>> Rich
>>>>>
>>>>> On Apr 11, 2012, at 4:10 PM, Jared Brooks wrote:
>>>>>
>>>>>> I have had these commands in my .profile
>>>>>>
>>>>>> export MESASDK_ROOT=/opt/mesasdk
>>>>>> source $MESASDK_ROOT/bin/mesasdk_init.sh
>>>>>> export OMP_NUM_THREADS=4
>>>>>> export LIBRARY_PATH=/usr/lib/x86_64-linux-gnu
>>>>>> export LD_RUN_PATH=/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu
>>>>>>
>>>>>> -Jared
>>>>>>
>>>>>> On Wed, Apr 11, 2012 at 1:53 PM, Richard Townsend <townsend at astro.wisc.edu> wrote:
>>>>>> Have you initialized the SDK properly using the appropriate script? You have to do this each time you log in -- or add a line to your start-up file (.cshrc, .bashrc, etc.)
>>>>>>
>>>>>> On Apr 11, 2012, at 3:33 PM, Jared Brooks wrote:
>>>>>>
>>>>>> > Hello, I'm running Ubuntu and I can't get MESA installed completely. I'm using the MESA_SDK and I followed the FAQ, yet I'm still stuck. I got the install script to run for a few hours before it stopped and now will only give me this:
>>>>>> >
>>>>>> > jared at ubuntu:~/mesa$ ./install
>>>>>> > checking if ndiff is installed ...
>>>>>> > yes!
>>>>>> >
>>>>>> > /home/jared/mesa/const
>>>>>> > building const package.
>>>>>> >
>>>>>> > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -O2 -c -ffixed-form -ffixed-line-length-132 ../public/const_def.f
>>>>>> > make: gfortran: Command not found
>>>>>> > make: *** [const_def.o] Error 127
>>>>>> >
>>>>>> > /home/jared/mesa/const/make
>>>>>> > FAILED
>>>>>> >
>>>>>> >
>>>>>> > /home/jared/mesa/const
>>>>>> > ./build_and_test FAILED
>>>>>> >
>>>>>> >
>>>>>> > And I found this message in the file mesa/const/test/tmp.txt:
>>>>>> >
>>>>>> > ./tester: error while loading shared libraries: libgfortran.so.3: cannot open shared object file: No such file or directory
>>>>>> >
>>>>>> > I found the file libgfortran.so.3 in /opt/mesasdk/lib64/, it seems to be just a pointer to libgfortran.so.3.0.0.
>>>>>> >
>>>>>> > -Jared
>>>>>> > ------------------------------------------------------------------------------
>>>>>> > Better than sec? Nothing is better than sec when it comes to
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>>>>>> > http://p.sf.net/sfu/Boundary-dev2dev_______________________________________________
>>>>>> > mesa-users mailing list
>>>>>> > mesa-users at lists.sourceforge.net
>>>>>> > https://lists.sourceforge.net/lists/listinfo/mesa-users
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>
>>>
>>
>>
>
>
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