[mesa-users] Installing MESA

Richard Townsend townsend at astro.wisc.edu
Wed Apr 11 17:48:11 EDT 2012 

Please could you send the new 'ls -l', and also let me know the actual name of the file you unpacked into /opt.

cheers,

Rich

On Apr 11, 2012, at 4:46 PM, Jared Brooks wrote:

> I changed those permissions, and those changes were reflected by a ls -l, but it is still denying me permission.
> 
> I downloaded the Linux 64 bit SDK from this page: http://www.astro.wisc.edu/~townsend/static.php?ref=mesasdk
> 
> -Jared
> 
> On Wed, Apr 11, 2012 at 2:37 PM, Richard Townsend <townsend at astro.wisc.edu> wrote:
> As root user, execute the following:
> 
> chmod 755 /opt/mesasdk/bin/mesasdk_init.csh
> chmod 755 /opt/mesasdk/bin/mesasdk_init.sh
> 
> I'm not sure what led to this problem; what version of the SDK are you using (i.e., what file did you download)?
> 
> cheers,
> 
> Rich
> 
> On Apr 11, 2012, at 4:34 PM, Jared Brooks wrote:
> 
>> jared at ubuntu:/opt/mesasdk/bin$ ls -l /opt/mesasdk/bin
>> total 24536
>> -rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 c++
>> -rwxr-xr-x 1 500 500 2150346 2012-01-20 09:54 cpp
>> -rwxr-xr-x 1 500 500   77266 2012-01-20 10:03 fpx3
>> -rwxr-xr-x 1 500 500    2564 2012-01-20 10:03 fpx3_deps
>> -rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 g++
>> -rwxr-xr-x 3 500 500 2147774 2012-01-20 09:54 gcc
>> -rwxr-xr-x 2 500 500  119881 2012-01-20 09:54 gcc-ar
>> -rwxr-xr-x 2 500 500  119817 2012-01-20 09:54 gcc-nm
>> -rwxr-xr-x 2 500 500  119837 2012-01-20 09:54 gcc-ranlib
>> -rwxr-xr-x 1 500 500 1086658 2012-01-20 09:54 gcov
>> -rwxr-xr-x 2 500 500 2160578 2012-01-20 09:54 gfortran
>> -rwxr-xr-x 1 500 500   41082 2012-01-20 10:02 gif2h5
>> -rwxr-xr-x 1 500 500   38244 2012-01-20 10:02 h52gif
>> -rwxr-xr-x 1 500 500   12551 2012-01-20 10:02 h5cc
>> -rwxr-xr-x 1 500 500  112948 2012-01-20 10:02 h5copy
>> -rwxr-xr-x 1 500 500   19590 2012-01-20 10:02 h5debug
>> -rwxr-xr-x 1 500 500  229329 2012-01-20 10:02 h5diff
>> -rwxr-xr-x 1 500 500  197313 2012-01-20 10:02 h5dump
>> -rwxr-xr-x 1 500 500   11693 2012-01-20 10:02 h5fc
>> -rwxr-xr-x 1 500 500   79908 2012-01-20 10:02 h5import
>> -rwxr-xr-x 1 500 500   35368 2012-01-20 10:02 h5jam
>> -rwxr-xr-x 1 500 500  141757 2012-01-20 10:02 h5ls
>> -rwxr-xr-x 1 500 500  111278 2012-01-20 10:02 h5mkgrp
>> -rwxr-xr-x 1 500 500   69706 2012-01-20 10:02 h5perf_serial
>> -rwxr-xr-x 1 500 500    4434 2012-01-20 10:02 h5redeploy
>> -rwxr-xr-x 1 500 500  169697 2012-01-20 10:02 h5repack
>> -rwxr-xr-x 1 500 500   15639 2012-01-20 10:02 h5repart
>> -rwxr-xr-x 1 500 500  122193 2012-01-20 10:02 h5stat
>> -rwxr-xr-x 1 500 500   32235 2012-01-20 10:02 h5unjam
>> -rwxr-xr-x 1 500 500    1137 2012-01-20 10:03 mesasdk_arch_check.pl
>> -rwxr-xr-x 1 500 500      71 2012-01-20 09:55 mesasdk_blas_link
>> -rwxr-xr-x 1 500 500      89 2012-01-20 10:03 mesasdk_hdf5_link
>> -rwxrwx--- 1 500 500     835 2012-01-20 10:03 mesasdk_init.csh
>> -rwxrwx--- 1 500 500     611 2012-01-20 10:03 mesasdk_init.sh
>> -rwxr-xr-x 1 500 500     101 2012-01-20 09:58 mesasdk_lapack95_link
>> -rwxr-xr-x 1 500 500      95 2012-01-20 09:56 mesasdk_lapack_link
>> -rwxr-xr-x 1 500 500      83 2012-01-20 09:58 mesasdk_pgplot_link
>> -rwxr-xr-x 1 500 500      86 2012-01-20 10:03 mesasdk_se_link
>> -rwxr-xr-x 2 500 500   42426 2012-01-20 10:03 ndiff
>> -rwxr-xr-x 2 500 500   42426 2012-01-20 10:03 ndiff-2.00
>> -rwxr-xr-x 1 500 500   12512 2012-01-20 10:03 touchse
>> -rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 x86_64-pc-linux-gnu-c++
>> -rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 x86_64-pc-linux-gnu-g++
>> -rwxr-xr-x 3 500 500 2147774 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc
>> -rwxr-xr-x 3 500 500 2147774 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc-4.7.0
>> -rwxr-xr-x 2 500 500  119881 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc-ar
>> -rwxr-xr-x 2 500 500  119817 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc-nm
>> -rwxr-xr-x 2 500 500  119837 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc-ranlib
>> -rwxr-xr-x 2 500 500 2160578 2012-01-20 09:54 x86_64-pc-linux-gnu-gfortran
>> jared at ubuntu:/opt/mesasdk/bin$ more mesasdk_init.sh 
>> mesasdk_init.sh: Permission denied 
>> 
>> It looks like I should be able to access all these files, but for some reason it's still keeping me out
>> 
>> -Jared
>> 
>> 
>> On Wed, Apr 11, 2012 at 2:30 PM, Richard Townsend <townsend at astro.wisc.edu> wrote:
>> Could you post the output from 'ls -l /opt/mesasdk/bin'. That will show what permission problems may exist.
>> 
>> On Apr 11, 2012, at 4:27 PM, Jared Brooks wrote:
>> 
>>> Here's a command I found concerning PATH in my .profile:
>>> 
>>> # set PATH so it includes user's private bin if it exists
>>> if [ -d "$HOME/bin" ] ; then
>>>     PATH="$HOME/bin:$PATH"
>>> fi
>>> 
>>> And here's the output to that source command:
>>> 
>>> jared at ubuntu:~/mesa$ source $MESASDK_ROOT/bin/mesasdk_init.sh
>>> bash: /opt/mesasdk/bin/mesasdk_init.sh: Permission denied
>>> 
>>> I've had a hunch that permissions were at the source of my problems, but I still don't understand why it's keeping me out.
>>> 
>>> -Jared
>>> 
>>> On Wed, Apr 11, 2012 at 2:20 PM, Richard Townsend <townsend at astro.wisc.edu> wrote:
>>> OK, thanks. Please post the output when you run
>>> 
>>> source $MESASDK_ROOT/bin/mesasdk_init.sh
>>> 
>>> Also, please confirm that you don't have anything else in your .profile startup script which overwrites the PATH environment variable.
>>> 
>>> cheers,
>>> 
>>> Rich
>>> 
>>> On Apr 11, 2012, at 4:17 PM, Jared Brooks wrote:
>>> 
>>>> jared at ubuntu:~/mesa$ which gfortran
>>>> jared at ubuntu:~/mesa$ echo $MESASDK_ROOT
>>>> /opt/mesasdk
>>>> jared at ubuntu:~/mesa$ echo $PATH
>>>> /usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
>>>> 
>>>> -Jared
>>>> 
>>>> On Wed, Apr 11, 2012 at 2:14 PM, Richard Townsend <townsend at astro.wisc.edu> wrote:
>>>> After you get the 'make: gfortran: Command not found', please run the following commands and post the output:
>>>> 
>>>> which gfortran
>>>> 
>>>> echo $MESASDK_ROOT
>>>> 
>>>> echo $PATH
>>>> 
>>>> cheers,
>>>> 
>>>> Rich
>>>> 
>>>> On Apr 11, 2012, at 4:10 PM, Jared Brooks wrote:
>>>> 
>>>>> I have had these commands in my .profile
>>>>> 
>>>>> export MESASDK_ROOT=/opt/mesasdk
>>>>> source $MESASDK_ROOT/bin/mesasdk_init.sh
>>>>> export OMP_NUM_THREADS=4
>>>>> export LIBRARY_PATH=/usr/lib/x86_64-linux-gnu
>>>>> export LD_RUN_PATH=/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu
>>>>> 
>>>>> -Jared
>>>>> 
>>>>> On Wed, Apr 11, 2012 at 1:53 PM, Richard Townsend <townsend at astro.wisc.edu> wrote:
>>>>> Have you initialized the SDK properly using the appropriate script? You have to do this each time you log in -- or add a line to your start-up file (.cshrc, .bashrc, etc.)
>>>>> 
>>>>> On Apr 11, 2012, at 3:33 PM, Jared Brooks wrote:
>>>>> 
>>>>> > Hello, I'm running Ubuntu and I can't get MESA installed completely.  I'm using the MESA_SDK and I followed the FAQ, yet I'm still stuck.  I got the install script to run for a few hours before it stopped and now will only give me this:
>>>>> >
>>>>> > jared at ubuntu:~/mesa$ ./install
>>>>> > checking if ndiff is installed ...
>>>>> > yes!
>>>>> >
>>>>> > /home/jared/mesa/const
>>>>> > building const package.
>>>>> >
>>>>> > gfortran -fno-range-check  -fopenmp  -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none   -O2 -c -ffixed-form -ffixed-line-length-132 ../public/const_def.f
>>>>> > make: gfortran: Command not found
>>>>> > make: *** [const_def.o] Error 127
>>>>> >
>>>>> > /home/jared/mesa/const/make
>>>>> > FAILED
>>>>> >
>>>>> >
>>>>> > /home/jared/mesa/const
>>>>> > ./build_and_test FAILED
>>>>> >
>>>>> >
>>>>> > And I found this message in the file mesa/const/test/tmp.txt:
>>>>> >
>>>>> > ./tester: error while loading shared libraries: libgfortran.so.3: cannot open shared object file: No such file or directory
>>>>> >
>>>>> > I found the file libgfortran.so.3 in /opt/mesasdk/lib64/, it seems to be just a pointer to libgfortran.so.3.0.0.
>>>>> >
>>>>> > -Jared
>>>>> > ------------------------------------------------------------------------------
>>>>> > Better than sec? Nothing is better than sec when it comes to
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>>>>> > http://p.sf.net/sfu/Boundary-dev2dev_______________________________________________
>>>>> > mesa-users mailing list
>>>>> > mesa-users at lists.sourceforge.net
>>>>> > https://lists.sourceforge.net/lists/listinfo/mesa-users
>>>>> 
>>>>> 
>>>> 
>>>> 
>>> 
>>> 
>> 
>> 
> 
> 

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