[mesa-users] Installing MESA

Jared Brooks brooksjaredc at gmail.com
Wed Apr 11 17:46:48 EDT 2012 

I changed those permissions, and those changes were reflected by a ls -l,
but it is still denying me permission.

I downloaded the Linux 64 bit SDK from this page:
http://www.astro.wisc.edu/~townsend/static.php?ref=mesasdk

-Jared

On Wed, Apr 11, 2012 at 2:37 PM, Richard Townsend
<townsend at astro.wisc.edu>wrote:

> As root user, execute the following:
>
> chmod 755 /opt/mesasdk/bin/mesasdk_init.csh
> chmod 755 /opt/mesasdk/bin/mesasdk_init.sh
>
> I'm not sure what led to this problem; what version of the SDK are you
> using (i.e., what file did you download)?
>
> cheers,
>
> Rich
>
> On Apr 11, 2012, at 4:34 PM, Jared Brooks wrote:
>
> jared at ubuntu:/opt/mesasdk/bin$ ls -l /opt/mesasdk/bin
> total 24536
> -rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 c++
> -rwxr-xr-x 1 500 500 2150346 2012-01-20 09:54 cpp
> -rwxr-xr-x 1 500 500   77266 2012-01-20 10:03 fpx3
> -rwxr-xr-x 1 500 500    2564 2012-01-20 10:03 fpx3_deps
> -rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 g++
> -rwxr-xr-x 3 500 500 2147774 2012-01-20 09:54 gcc
> -rwxr-xr-x 2 500 500  119881 2012-01-20 09:54 gcc-ar
> -rwxr-xr-x 2 500 500  119817 2012-01-20 09:54 gcc-nm
> -rwxr-xr-x 2 500 500  119837 2012-01-20 09:54 gcc-ranlib
> -rwxr-xr-x 1 500 500 1086658 2012-01-20 09:54 gcov
> -rwxr-xr-x 2 500 500 2160578 2012-01-20 09:54 gfortran
> -rwxr-xr-x 1 500 500   41082 2012-01-20 10:02 gif2h5
> -rwxr-xr-x 1 500 500   38244 2012-01-20 10:02 h52gif
> -rwxr-xr-x 1 500 500   12551 2012-01-20 10:02 h5cc
> -rwxr-xr-x 1 500 500  112948 2012-01-20 10:02 h5copy
> -rwxr-xr-x 1 500 500   19590 2012-01-20 10:02 h5debug
> -rwxr-xr-x 1 500 500  229329 2012-01-20 10:02 h5diff
> -rwxr-xr-x 1 500 500  197313 2012-01-20 10:02 h5dump
> -rwxr-xr-x 1 500 500   11693 2012-01-20 10:02 h5fc
> -rwxr-xr-x 1 500 500   79908 2012-01-20 10:02 h5import
> -rwxr-xr-x 1 500 500   35368 2012-01-20 10:02 h5jam
> -rwxr-xr-x 1 500 500  141757 2012-01-20 10:02 h5ls
> -rwxr-xr-x 1 500 500  111278 2012-01-20 10:02 h5mkgrp
> -rwxr-xr-x 1 500 500   69706 2012-01-20 10:02 h5perf_serial
> -rwxr-xr-x 1 500 500    4434 2012-01-20 10:02 h5redeploy
> -rwxr-xr-x 1 500 500  169697 2012-01-20 10:02 h5repack
> -rwxr-xr-x 1 500 500   15639 2012-01-20 10:02 h5repart
> -rwxr-xr-x 1 500 500  122193 2012-01-20 10:02 h5stat
> -rwxr-xr-x 1 500 500   32235 2012-01-20 10:02 h5unjam
> -rwxr-xr-x 1 500 500    1137 2012-01-20 10:03 mesasdk_arch_check.pl
> -rwxr-xr-x 1 500 500      71 2012-01-20 09:55 mesasdk_blas_link
> -rwxr-xr-x 1 500 500      89 2012-01-20 10:03 mesasdk_hdf5_link
> -rwxrwx--- 1 500 500     835 2012-01-20 10:03 mesasdk_init.csh
> -rwxrwx--- 1 500 500     611 2012-01-20 10:03 mesasdk_init.sh
> -rwxr-xr-x 1 500 500     101 2012-01-20 09:58 mesasdk_lapack95_link
> -rwxr-xr-x 1 500 500      95 2012-01-20 09:56 mesasdk_lapack_link
> -rwxr-xr-x 1 500 500      83 2012-01-20 09:58 mesasdk_pgplot_link
> -rwxr-xr-x 1 500 500      86 2012-01-20 10:03 mesasdk_se_link
> -rwxr-xr-x 2 500 500   42426 2012-01-20 10:03 ndiff
> -rwxr-xr-x 2 500 500   42426 2012-01-20 10:03 ndiff-2.00
> -rwxr-xr-x 1 500 500   12512 2012-01-20 10:03 touchse
> -rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 x86_64-pc-linux-gnu-c++
> -rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 x86_64-pc-linux-gnu-g++
> -rwxr-xr-x 3 500 500 2147774 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc
> -rwxr-xr-x 3 500 500 2147774 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc-4.7.0
> -rwxr-xr-x 2 500 500  119881 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc-ar
> -rwxr-xr-x 2 500 500  119817 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc-nm
> -rwxr-xr-x 2 500 500  119837 2012-01-20 09:54
> x86_64-pc-linux-gnu-gcc-ranlib
> -rwxr-xr-x 2 500 500 2160578 2012-01-20 09:54 x86_64-pc-linux-gnu-gfortran
> jared at ubuntu:/opt/mesasdk/bin$ more mesasdk_init.sh
> mesasdk_init.sh: Permission denied
>
> It looks like I should be able to access all these files, but for some
> reason it's still keeping me out
>
> -Jared
>
>
> On Wed, Apr 11, 2012 at 2:30 PM, Richard Townsend <townsend at astro.wisc.edu
> > wrote:
>
>> Could you post the output from 'ls -l /opt/mesasdk/bin'. That will show
>> what permission problems may exist.
>>
>> On Apr 11, 2012, at 4:27 PM, Jared Brooks wrote:
>>
>> Here's a command I found concerning PATH in my .profile:
>>
>> # set PATH so it includes user's private bin if it exists
>> if [ -d "$HOME/bin" ] ; then
>>     PATH="$HOME/bin:$PATH"
>> fi
>>
>> And here's the output to that source command:
>>
>> jared at ubuntu:~/mesa$ source $MESASDK_ROOT/bin/mesasdk_init.sh
>> bash: /opt/mesasdk/bin/mesasdk_init.sh: Permission denied
>>
>> I've had a hunch that permissions were at the source of my problems, but
>> I still don't understand why it's keeping me out.
>>
>> -Jared
>>
>> On Wed, Apr 11, 2012 at 2:20 PM, Richard Townsend <
>> townsend at astro.wisc.edu> wrote:
>>
>>> OK, thanks. Please post the output when you run
>>>
>>> source $MESASDK_ROOT/bin/mesasdk_init.sh
>>>
>>> Also, please confirm that you don't have anything else in your .profile
>>> startup script which overwrites the PATH environment variable.
>>>
>>> cheers,
>>>
>>> Rich
>>>
>>> On Apr 11, 2012, at 4:17 PM, Jared Brooks wrote:
>>>
>>> jared at ubuntu:~/mesa$ which gfortran
>>> jared at ubuntu:~/mesa$ echo $MESASDK_ROOT
>>> /opt/mesasdk
>>> jared at ubuntu:~/mesa$ echo $PATH
>>>
>>> /usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
>>>
>>> -Jared
>>>
>>> On Wed, Apr 11, 2012 at 2:14 PM, Richard Townsend <
>>> townsend at astro.wisc.edu> wrote:
>>>
>>>> After you get the 'make: gfortran: Command not found', please run the
>>>> following commands and post the output:
>>>>
>>>> which gfortran
>>>>
>>>> echo $MESASDK_ROOT
>>>>
>>>> echo $PATH
>>>>
>>>> cheers,
>>>>
>>>> Rich
>>>>
>>>> On Apr 11, 2012, at 4:10 PM, Jared Brooks wrote:
>>>>
>>>> I have had these commands in my .profile
>>>>
>>>> export MESASDK_ROOT=/opt/mesasdk
>>>> source $MESASDK_ROOT/bin/mesasdk_init.sh
>>>> export OMP_NUM_THREADS=4
>>>> export LIBRARY_PATH=/usr/lib/x86_64-linux-gnu
>>>> export LD_RUN_PATH=/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu
>>>>
>>>> -Jared
>>>>
>>>> On Wed, Apr 11, 2012 at 1:53 PM, Richard Townsend <
>>>> townsend at astro.wisc.edu> wrote:
>>>>
>>>>> Have you initialized the SDK properly using the appropriate script?
>>>>> You have to do this each time you log in -- or add a line to your start-up
>>>>> file (.cshrc, .bashrc, etc.)
>>>>>
>>>>> On Apr 11, 2012, at 3:33 PM, Jared Brooks wrote:
>>>>>
>>>>> > Hello, I'm running Ubuntu and I can't get MESA installed completely.
>>>>>  I'm using the MESA_SDK and I followed the FAQ, yet I'm still stuck.  I got
>>>>> the install script to run for a few hours before it stopped and now will
>>>>> only give me this:
>>>>> >
>>>>> > jared at ubuntu:~/mesa$ ./install
>>>>> > checking if ndiff is installed ...
>>>>> > yes!
>>>>> >
>>>>> > /home/jared/mesa/const
>>>>> > building const package.
>>>>> >
>>>>> > gfortran -fno-range-check  -fopenmp  -I../public -I../private
>>>>> -I../../include -Wunused-value -Werror -W -fimplicit-none   -O2 -c
>>>>> -ffixed-form -ffixed-line-length-132 ../public/const_def.f
>>>>> > make: gfortran: Command not found
>>>>> > make: *** [const_def.o] Error 127
>>>>> >
>>>>> > /home/jared/mesa/const/make
>>>>> > FAILED
>>>>> >
>>>>> >
>>>>> > /home/jared/mesa/const
>>>>> > ./build_and_test FAILED
>>>>> >
>>>>> >
>>>>> > And I found this message in the file mesa/const/test/tmp.txt:
>>>>> >
>>>>> > ./tester: error while loading shared libraries: libgfortran.so.3:
>>>>> cannot open shared object file: No such file or directory
>>>>> >
>>>>> > I found the file libgfortran.so.3 in /opt/mesasdk/lib64/, it seems
>>>>> to be just a pointer to libgfortran.so.3.0.0.
>>>>> >
>>>>> > -Jared
>>>>> >
>>>>> ------------------------------------------------------------------------------
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>>>>> >
>>>>> http://p.sf.net/sfu/Boundary-dev2dev_______________________________________________
>>>>> > mesa-users mailing list
>>>>> > mesa-users at lists.sourceforge.net
>>>>> > https://lists.sourceforge.net/lists/listinfo/mesa-users
>>>>>
>>>>>
>>>>
>>>>
>>>
>>>
>>
>>
>
>
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