[mesa-users] Installing MESA

Jared Brooks brooksjaredc at gmail.com
Wed Apr 11 17:34:19 EDT 2012 

jared at ubuntu:/opt/mesasdk/bin$ ls -l /opt/mesasdk/bin
total 24536
-rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 c++
-rwxr-xr-x 1 500 500 2150346 2012-01-20 09:54 cpp
-rwxr-xr-x 1 500 500   77266 2012-01-20 10:03 fpx3
-rwxr-xr-x 1 500 500    2564 2012-01-20 10:03 fpx3_deps
-rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 g++
-rwxr-xr-x 3 500 500 2147774 2012-01-20 09:54 gcc
-rwxr-xr-x 2 500 500  119881 2012-01-20 09:54 gcc-ar
-rwxr-xr-x 2 500 500  119817 2012-01-20 09:54 gcc-nm
-rwxr-xr-x 2 500 500  119837 2012-01-20 09:54 gcc-ranlib
-rwxr-xr-x 1 500 500 1086658 2012-01-20 09:54 gcov
-rwxr-xr-x 2 500 500 2160578 2012-01-20 09:54 gfortran
-rwxr-xr-x 1 500 500   41082 2012-01-20 10:02 gif2h5
-rwxr-xr-x 1 500 500   38244 2012-01-20 10:02 h52gif
-rwxr-xr-x 1 500 500   12551 2012-01-20 10:02 h5cc
-rwxr-xr-x 1 500 500  112948 2012-01-20 10:02 h5copy
-rwxr-xr-x 1 500 500   19590 2012-01-20 10:02 h5debug
-rwxr-xr-x 1 500 500  229329 2012-01-20 10:02 h5diff
-rwxr-xr-x 1 500 500  197313 2012-01-20 10:02 h5dump
-rwxr-xr-x 1 500 500   11693 2012-01-20 10:02 h5fc
-rwxr-xr-x 1 500 500   79908 2012-01-20 10:02 h5import
-rwxr-xr-x 1 500 500   35368 2012-01-20 10:02 h5jam
-rwxr-xr-x 1 500 500  141757 2012-01-20 10:02 h5ls
-rwxr-xr-x 1 500 500  111278 2012-01-20 10:02 h5mkgrp
-rwxr-xr-x 1 500 500   69706 2012-01-20 10:02 h5perf_serial
-rwxr-xr-x 1 500 500    4434 2012-01-20 10:02 h5redeploy
-rwxr-xr-x 1 500 500  169697 2012-01-20 10:02 h5repack
-rwxr-xr-x 1 500 500   15639 2012-01-20 10:02 h5repart
-rwxr-xr-x 1 500 500  122193 2012-01-20 10:02 h5stat
-rwxr-xr-x 1 500 500   32235 2012-01-20 10:02 h5unjam
-rwxr-xr-x 1 500 500    1137 2012-01-20 10:03 mesasdk_arch_check.pl
-rwxr-xr-x 1 500 500      71 2012-01-20 09:55 mesasdk_blas_link
-rwxr-xr-x 1 500 500      89 2012-01-20 10:03 mesasdk_hdf5_link
-rwxrwx--- 1 500 500     835 2012-01-20 10:03 mesasdk_init.csh
-rwxrwx--- 1 500 500     611 2012-01-20 10:03 mesasdk_init.sh
-rwxr-xr-x 1 500 500     101 2012-01-20 09:58 mesasdk_lapack95_link
-rwxr-xr-x 1 500 500      95 2012-01-20 09:56 mesasdk_lapack_link
-rwxr-xr-x 1 500 500      83 2012-01-20 09:58 mesasdk_pgplot_link
-rwxr-xr-x 1 500 500      86 2012-01-20 10:03 mesasdk_se_link
-rwxr-xr-x 2 500 500   42426 2012-01-20 10:03 ndiff
-rwxr-xr-x 2 500 500   42426 2012-01-20 10:03 ndiff-2.00
-rwxr-xr-x 1 500 500   12512 2012-01-20 10:03 touchse
-rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 x86_64-pc-linux-gnu-c++
-rwxr-xr-x 4 500 500 2153392 2012-01-20 09:54 x86_64-pc-linux-gnu-g++
-rwxr-xr-x 3 500 500 2147774 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc
-rwxr-xr-x 3 500 500 2147774 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc-4.7.0
-rwxr-xr-x 2 500 500  119881 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc-ar
-rwxr-xr-x 2 500 500  119817 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc-nm
-rwxr-xr-x 2 500 500  119837 2012-01-20 09:54 x86_64-pc-linux-gnu-gcc-ranlib
-rwxr-xr-x 2 500 500 2160578 2012-01-20 09:54 x86_64-pc-linux-gnu-gfortran
jared at ubuntu:/opt/mesasdk/bin$ more mesasdk_init.sh
mesasdk_init.sh: Permission denied

It looks like I should be able to access all these files, but for some
reason it's still keeping me out

-Jared


On Wed, Apr 11, 2012 at 2:30 PM, Richard Townsend
<townsend at astro.wisc.edu>wrote:

> Could you post the output from 'ls -l /opt/mesasdk/bin'. That will show
> what permission problems may exist.
>
> On Apr 11, 2012, at 4:27 PM, Jared Brooks wrote:
>
> Here's a command I found concerning PATH in my .profile:
>
> # set PATH so it includes user's private bin if it exists
> if [ -d "$HOME/bin" ] ; then
>     PATH="$HOME/bin:$PATH"
> fi
>
> And here's the output to that source command:
>
> jared at ubuntu:~/mesa$ source $MESASDK_ROOT/bin/mesasdk_init.sh
> bash: /opt/mesasdk/bin/mesasdk_init.sh: Permission denied
>
> I've had a hunch that permissions were at the source of my problems, but I
> still don't understand why it's keeping me out.
>
> -Jared
>
> On Wed, Apr 11, 2012 at 2:20 PM, Richard Townsend <townsend at astro.wisc.edu
> > wrote:
>
>> OK, thanks. Please post the output when you run
>>
>> source $MESASDK_ROOT/bin/mesasdk_init.sh
>>
>> Also, please confirm that you don't have anything else in your .profile
>> startup script which overwrites the PATH environment variable.
>>
>> cheers,
>>
>> Rich
>>
>> On Apr 11, 2012, at 4:17 PM, Jared Brooks wrote:
>>
>> jared at ubuntu:~/mesa$ which gfortran
>> jared at ubuntu:~/mesa$ echo $MESASDK_ROOT
>> /opt/mesasdk
>> jared at ubuntu:~/mesa$ echo $PATH
>>
>> /usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
>>
>> -Jared
>>
>> On Wed, Apr 11, 2012 at 2:14 PM, Richard Townsend <
>> townsend at astro.wisc.edu> wrote:
>>
>>> After you get the 'make: gfortran: Command not found', please run the
>>> following commands and post the output:
>>>
>>> which gfortran
>>>
>>> echo $MESASDK_ROOT
>>>
>>> echo $PATH
>>>
>>> cheers,
>>>
>>> Rich
>>>
>>> On Apr 11, 2012, at 4:10 PM, Jared Brooks wrote:
>>>
>>> I have had these commands in my .profile
>>>
>>> export MESASDK_ROOT=/opt/mesasdk
>>> source $MESASDK_ROOT/bin/mesasdk_init.sh
>>> export OMP_NUM_THREADS=4
>>> export LIBRARY_PATH=/usr/lib/x86_64-linux-gnu
>>> export LD_RUN_PATH=/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu
>>>
>>> -Jared
>>>
>>> On Wed, Apr 11, 2012 at 1:53 PM, Richard Townsend <
>>> townsend at astro.wisc.edu> wrote:
>>>
>>>> Have you initialized the SDK properly using the appropriate script? You
>>>> have to do this each time you log in -- or add a line to your start-up file
>>>> (.cshrc, .bashrc, etc.)
>>>>
>>>> On Apr 11, 2012, at 3:33 PM, Jared Brooks wrote:
>>>>
>>>> > Hello, I'm running Ubuntu and I can't get MESA installed completely.
>>>>  I'm using the MESA_SDK and I followed the FAQ, yet I'm still stuck.  I got
>>>> the install script to run for a few hours before it stopped and now will
>>>> only give me this:
>>>> >
>>>> > jared at ubuntu:~/mesa$ ./install
>>>> > checking if ndiff is installed ...
>>>> > yes!
>>>> >
>>>> > /home/jared/mesa/const
>>>> > building const package.
>>>> >
>>>> > gfortran -fno-range-check  -fopenmp  -I../public -I../private
>>>> -I../../include -Wunused-value -Werror -W -fimplicit-none   -O2 -c
>>>> -ffixed-form -ffixed-line-length-132 ../public/const_def.f
>>>> > make: gfortran: Command not found
>>>> > make: *** [const_def.o] Error 127
>>>> >
>>>> > /home/jared/mesa/const/make
>>>> > FAILED
>>>> >
>>>> >
>>>> > /home/jared/mesa/const
>>>> > ./build_and_test FAILED
>>>> >
>>>> >
>>>> > And I found this message in the file mesa/const/test/tmp.txt:
>>>> >
>>>> > ./tester: error while loading shared libraries: libgfortran.so.3:
>>>> cannot open shared object file: No such file or directory
>>>> >
>>>> > I found the file libgfortran.so.3 in /opt/mesasdk/lib64/, it seems to
>>>> be just a pointer to libgfortran.so.3.0.0.
>>>> >
>>>> > -Jared
>>>> >
>>>> ------------------------------------------------------------------------------
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>>>> http://p.sf.net/sfu/Boundary-dev2dev_______________________________________________
>>>> > mesa-users mailing list
>>>> > mesa-users at lists.sourceforge.net
>>>> > https://lists.sourceforge.net/lists/listinfo/mesa-users
>>>>
>>>>
>>>
>>>
>>
>>
>
>
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