[mesa-users] Error during installation

Kent Budge kgbudge at lanl.gov
Tue Jan 18 12:01:11 EST 2011


Another data point for you, Bill. I can build pulse with gfortran 4.5.1
on my home computer, but not with 4.5.0 here at work.

--Kent G. Budge

On Sun, 2011-01-16 at 09:59 -0800, Bill Paxton wrote:
> Hi Evan,
> 
> 
> Excellent!  Thanks for that info.   
> I've now found that I get a crash at that same line when I run
> Red Hat 4.4.5-2
> gcc version 4.6.0 20100609
> If I comment out that deallocate, it finishes the test okay.
> There must be enough variation in the runtime dynamic allocation
> that we are breaking things for some systems but not for others.
> 
> 
> Until the problem is found and fixed, I'll change pulse installation
> to be optional.
> 
> 
> As a workaround, it is okay to comment out the "do_one pulse" line in
> the install script.
> 
> 
> Bill
> 
> 
> 
> 
> On Jan 16, 2011, at 9:26 AM, Evan O'Connor wrote:
> 
> > Hello,
> > 
> > 
> > I've also had issues with installation and pulse. I have ifort 12
> > (Mac) which works fine but with ifort 11.1(Linux) on another
> > computer I use I have an issue. The test itself go smoothly (the
> > correct output is in the tmp.txt file) but then gets hung up
> > indefinitely on the following line in pulse.f:do_free_pulse_info
> > 
> > 
> > deallocate(p% x, p% aa, p% y, p% yri)
> > 
> > 
> > This doesn't seem to be the same error as Naveen but maybe is
> > somehow related. 
> > 
> > 
> > Evan
> > 
> > On Jan 16, 2011, at 8:54, Bill Paxton <paxton at kitp.ucsb.edu> wrote:
> > 
> > 
> > 
> > > Hi Naveen,
> > > 
> > > 
> > > Thanks for the detailed report.   
> > > The installation goes okay with ifort and gfortran on my mac --
> > > that's using gcc version 4.5.1 20100506.
> > > Linux installation issues are out of my area, so we'll need to see
> > > if someone else can help there.
> > > 
> > > 
> > > If it turns into a show stopper, I'll add installation switches to
> > > turn off pulse in the same way we have
> > > the option to run without pgplot.   Let me know.
> > > 
> > > 
> > > In the meantime, edit the install script to comment out the line
> > > 
> > > 
> > > do_one pulse
> > > 
> > > 
> > > and try again.
> > > 
> > > 
> > > -Bill
> > > 
> > > 
> > > 
> > > 
> > > 
> > > 
> > > 
> > > 
> > > 
> > > On Jan 16, 2011, at 5:34 AM, naveen yadav wrote:
> > > 
> > > >                                                 
> > > >                                                 
> > > >                                           Hi all,
> > > >                                      I am trying to
> > > >                                 install MESA and I am
> > > >                                    getting an error.
> > > >                                       The error is 
> > > > ******************************************************************************************
> > > >                              /home/astroboy/mesa/pulse
> > > >                                      building pulse
> > > >                                           package.
> > > >                                                 
> > > >                                                 
> > > >                                 make: `libpulse.a' is
> > > >                                        up to date.
> > > >                                    gfortran -fopenmp
> > > >                                        -o ../tester
> > > >                                        test_pulse.o
> > > >                                  -L../../make -lpulse
> > > >                                  -L../../../lib -leos
> > > >                                  -lkap -ljina -lweak
> > > >                                      -lnet -lscreen
> > > >                                  -lrates -lneu -lchem
> > > >                                        -linterp_2d
> > > >                                    -linterp_1d -lnum
> > > >                                     -lutils -lalert
> > > >                                       -lconst -lmtx
> > > >                                        -lmesalapack
> > > >                                         -lmesablas
> > > >                                                 
> > > >                                                 
> > > >                                                 
> > > >                                                 
> > > >                                            FAILED
> > > >                                                 
> > > >                                                 
> > > >                                                 
> > > >                                                 
> > > >                          /home/astroboy/mesa/pulse/test
> > > >                                      TEST FAILED --
> > > >                                  compare test_output
> > > >                                         to tmp.txt
> > > >                                                 
> > > >                                                 
> > > > ********************************************************************************************
> > > >                                      I am using GNU
> > > >                                  Fortran (GCC) 4.5.1
> > > >                                    20100924 (Red Hat
> > > >                                           4.5.1-4)
> > > >                                    I am using Pgplot
> > > >                                     without lpng and
> > > >                                           fortran
> > > >                   option ::SPECIAL_FC_FLAGS =  -fopenmpi.
> > > >                                  I am using the case
> > > >                                     (3) for BLAS and
> > > >                                     LAPACK libraries
> > > >                                      I am attaching
> > > >                                    the makefile ,the
> > > >                                    output of install
> > > >                                        step and the
> > > >                                          temp.txt.
> > > >                                                 
> > > >                                                 
> > > >                                                 
> > > >                                                 
> > > >                                           regards
> > > >                                           naveen 
> > > >                                                 
> > > >                                                 
> > > >                                                 
> > > > 
> > > > <install_output.txt.tar.gz>------------------------------------------------------------------------------
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> ------------------------------------------------------------------------------
> Protect Your Site and Customers from Malware Attacks
> Learn about various malware tactics and how to avoid them. Understand 
> malware threats, the impact they can have on your business, and how you 
> can protect your company and customers by using code signing.
> http://p.sf.net/sfu/oracle-sfdevnl
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